YRC Public Data Repository - Protein Structure Prediction

Protein:	FUR_BORBR
Organism:	Bordetella bronchiseptica
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUR_BORBR.

Description	E-value	Query Range	Subject Range
FUR_KLEPN - Ferric uptake regulation protein OS=Klebsiella pneumoniae GN=fur PE=3 SV=2	176.0	[0..2]	[137..3]
gi\|115423784, gi... - gi\|187479197\|ref\|YP_787222.1\| ferric ion uptake regulator [Bordetella avium 197N], gi\|115423784\|emb\|...	176.0	[0..1]	[139..1]
gi\|168240537, gi... - gi\|205340233\|gb\|EDZ26997.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|168264303, gi... - gi\|205347145\|gb\|EDZ33776.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|168467758, gi... - gi\|195629224\|gb\|EDX48592.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|168820186, gi... - gi\|205343196\|gb\|EDZ29960.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|167553945, gi... - gi\|205321727\|gb\|EDZ09566.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|167992961, gi... - gi\|205328895\|gb\|EDZ15659.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=fur] [protein=ferric uptake regulator] [protein_id=YP_005236408.1] [location=complement(756891... gi\|205334771, gi... - gi\|205334771\|gb\|EDZ21535.1\| ferric uptake regulation protein [Salmonella enterica subsp. enterica se... gi\|168236680, gi... - gi\|197290327\|gb\|EDY29683.1\| ferric uptake regulation protein (Ferric uptake regulator) [Salmonella e... gi\|161615087, gi... - gi\|161615087\|ref\|YP_001589052.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serova... gi\|238911637 - gi\|238911637\|ref\|ZP_04655474.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|16759637 - gi\|16759637\|ref\|NP_455254.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar Ty... gi\|213647554 - gi\|213647554\|ref\|ZP_03377607.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|213864784 - gi\|213864784\|ref\|ZP_03386903.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|16764063, gi\|... - gi\|16764063\|ref\|NP_459678.1\| ferric uptake regulator [Salmonella typhimurium LT2], gi\|16419201\|gb\|AA... gi\|213978038 - gi\|213978038\|ref\|ZP_03405297.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|29138221, gi\|... - gi\|29142590\|ref\|NP_805932.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar Ty... gi\|214001372 - gi\|214001372\|ref\|ZP_03412107.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|204930450, gi... - gi\|204930450\|ref\|ZP_03221380.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteric... gi\|213163196 - gi\|213163196\|ref\|ZP_03348906.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|213428181 - gi\|213428181\|ref\|ZP_03360931.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|213586325 - gi\|213586325\|ref\|ZP_03368151.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar... gi\|197211251, gi... - gi\|197247548\|ref\|YP_002145665.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteri... gi\|197264354, gi... - gi\|197264354\|ref\|ZP_03164428.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteric... gi\|197363110, gi... - gi\|197363110\|ref\|YP_002142747.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serova... gi\|199602474, gi... - gi\|200390029\|ref\|ZP_03216640.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteric... gi\|194404770, gi... - gi\|194446107\|ref\|YP_002039930.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteri... gi\|194449699, gi... - gi\|194449699\|ref\|YP_002044723.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serova... gi\|194472060, gi... - gi\|194472060\|ref\|ZP_03078044.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteric... gi\|194736941, gi... - gi\|194736941\|ref\|YP_002113799.1\| ferric uptake regulation protein [Salmonella enterica subsp. enteri... gi\|62126916, gi\|... - gi\|62179283\|ref\|YP_215700.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar Ch... gi\|56128444, gi\|... - gi\|56414187\|ref\|YP_151262.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serovar Pa... gi\|224467047, gi... - gi\|224582520\|ref\|YP_002636318.1\| ferric uptake regulator [Salmonella enterica subsp. enterica serova... gi\|16501929, gi\|... - gi\|25316994\|pir\|\|AB0586 ferric uptake regulation protein [imported] - Salmonella enterica subsp. ent...	171.0	[0..2]	[137..3]
FUR_VIBPA - Ferric uptake regulation protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=... FUR_VIBPA - Ferric uptake regulation protein OS=Vibrio parahaemolyticus GN=fur PE=3 SV=1	171.0	[0..2]	[138..3]
gi\|88792643, gi\|... - gi\|90192401\|gb\|AAY28416.2\| ferric uptake regulator [Vibrio alginolyticus], gi\|88792643\|gb\|ABD52297.1... gi\|91225929, gi\|... - gi\|91225929\|ref\|ZP_01260898.1\| ferric uptake regulator [Vibrio alginolyticus 12G01], gi\|91189579\|gb\|...	171.0	[0..2]	[138..3]
FUR_SHIFL - Ferric uptake regulation protein OS=Shigella flexneri GN=fur PE=3 SV=1 gi\|24050852, gi\|... - gi\|24112031\|ref\|NP_706541.1\| ferric uptake regulator [Shigella flexneri 2a str. 301], gi\|24050852\|gb...	171.0	[0..2]	[137..3]
gi\|194420938, gi... - gi\|83584543\|ref\|ZP_00923217.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli 101-1... gi\|187730107, gi... - gi\|75175174\|ref\|ZP_00695495.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Shigella boydii BS512]... gi\|83569133, gi\|... - gi\|83569133\|ref\|ZP_00920593.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Shigella dysenteriae 1... gi\|194430648, gi... - gi\|75207978\|ref\|ZP_00708406.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli B171]... gi\|193071731, gi... - gi\|75214659\|ref\|ZP_00713176.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli E1100... gi\|157156224, gi... - gi\|75189711\|ref\|ZP_00702978.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli E2437... gi\|75194850, gi\|... - gi\|75194850\|ref\|ZP_00704920.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli HS], ... EG10359 - ferric iron uptake regulon transcriptional repressor; autorepressor / Ferric iron uptake global tran... gi\|227838428, gi... - gi\|227884342\|ref\|ZP_04002147.1\| ferric uptake regulator [Escherichia coli 83972], gi\|227838428\|gb\|EE... gi\|226898558, gi... - gi\|237707348\|ref\|ZP_04537829.1\| negative regulator [Escherichia sp. 3_2_53FAA], gi\|226898558\|gb\|EEH8... gi\|238860938, gi... - gi\|238899949\|ref\|YP_002925745.1\| DNA-binding transcriptional dual regulator of siderophore biosynthe... gi\|251784173, gi... - gi\|251784173\|ref\|YP_002998477.1\| hypothetical protein B21_00631 [Escherichia coli BL21], gi\|24237644... gi\|253976846, gi... - gi\|254287539\|ref\|YP_003053287.1\| ferric uptake regulator [Escherichia coli BL21(DE3)], gi\|253976846\|... gi\|253972652, gi... - gi\|254160751\|ref\|YP_003043859.1\| ferric uptake regulator [Escherichia coli B str. REL606], gi\|253972... gi\|254591235, gi... - gi\|254791835\|ref\|YP_003076672.1\| DNA-binding transcriptional dual regulator of siderophore biosynthe... gi\|217325583, gi... - gi\|217325583\|ref\|ZP_03441667.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. TW14... gi\|215485714, gi... - gi\|215485714\|ref\|YP_002328145.1\| ferric uptake regulator [Escherichia coli O127:H6 str. E2348/69], g... gi\|218553216, gi... - gi\|218553216\|ref\|YP_002386129.1\| ferric uptake regulator [Escherichia coli IAI1], gi\|218359984\|emb\|C... gi\|218549749, gi... - gi\|218549749\|ref\|YP_002383540.1\| ferric uptake regulator [Escherichia fergusonii ATCC 35469], gi\|218... gi\|218426053, gi... - gi\|218688489\|ref\|YP_002396701.1\| ferric uptake regulator [Escherichia coli ED1a], gi\|218426053\|emb\|C... gi\|218557611, gi... - gi\|218557611\|ref\|YP_002390524.1\| ferric uptake regulator [Escherichia coli S88], gi\|218364380\|emb\|CA... gi\|218369023, gi... - gi\|218699037\|ref\|YP_002406666.1\| ferric uptake regulator [Escherichia coli IAI39], gi\|218369023\|emb\|... FUR_ECOL6 - Ferric uptake regulation protein OS=Escherichia coli O6 GN=fur PE=3 SV=1 gi\|218694111, gi... - gi\|218694111\|ref\|YP_002401778.1\| ferric uptake regulator [Escherichia coli 55989], gi\|218350843\|emb\|... gi\|170767903, gi... - gi\|170767903\|ref\|ZP_02902356.1\| ferric uptake regulation protein [Escherichia albertii TW07627], gi\|... gi\|170518320, gi... - gi\|170680602\|ref\|YP_001742794.1\| ferric uptake regulation protein [Escherichia coli SMS-3-5], gi\|170... gi\|208805963, gi... - gi\|208805963\|ref\|ZP_03248300.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC42... gi\|195939407 - gi\|195939407\|ref\|ZP_03084789.1\| ferric uptake regulator [Escherichia coli O157:H7 str. EC4024] gi\|208823218, gi... - gi\|208823218\|ref\|ZP_03263536.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC40... gi\|208731907, gi... - gi\|208815259\|ref\|ZP_03256438.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC40... gi\|209911195, gi... - gi\|209917936\|ref\|YP_002292020.1\| ferric uptake regulator [Escherichia coli SE11], gi\|209911195\|dbj\|B... gi\|209160587, gi... - gi\|209399187\|ref\|YP_002269311.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4... gi\|117622891, gi... - gi\|117622891\|ref\|YP_851804.1\| ferric uptake regulator [Escherichia coli APEC O1], gi\|115512015\|gb\|AB... gi\|124499710, gi... - gi\|124529707\|ref\|ZP_01700614.1\| ferric uptake regulator, Fur family [Escherichia coli B], gi\|1244997... gi\|218431104, gi... - gi\|218704007\|ref\|YP_002411526.1\| ferric uptake regulator [Escherichia coli UMN026], gi\|218431104\|emb... gi\|189363492, gi... - gi\|189363492\|gb\|EDU81911.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4486],... gi\|168765346, gi... - gi\|189364895\|gb\|EDU83311.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4501],... gi\|189002775, gi... - gi\|189002775\|gb\|EDU71761.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4076],... gi\|168777911, gi... - gi\|187766943\|gb\|EDU30787.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4196],... gi\|168803045, gi... - gi\|189375199\|gb\|EDU93615.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC508], ... gi\|189373644, gi... - gi\|189373644\|gb\|EDU92060.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC869], ... gi\|169888187, gi... - gi\|170080352\|ref\|YP_001729672.1\| DNA-binding transcriptional dual regulator of siderophore biosynthe... gi\|169755899, gi... - gi\|170020971\|ref\|YP_001725925.1\| ferric uptake regulator [Escherichia coli ATCC 8739], gi\|169755899\|... FUR_ECOL6 - Ferric uptake regulation protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=f... FUR_ECO57 - Ferric uptake regulation protein OS=Escherichia coli O157:H7 GN=fur PE=3 SV=1 gi\|30040387, gi\|... - gi\|30062142\|ref\|NP_836313.1\| ferric uptake regulator [Shigella flexneri 2a str. 2457T], gi\|30040387\|... gi\|15800386, gi\|... - gi\|15800386\|ref\|NP_286398.1\| ferric uptake regulator [Escherichia coli O157:H7 EDL933], gi\|12513585\|... gi\|189355785, gi... - gi\|189355785\|gb\|EDU74204.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4401],... EG10359 - ferric iron uptake regulon transcriptional repressor; autorepressor / Ferric iron uptake global tran... gi\|188013595, gi... - gi\|188013595\|gb\|EDU51717.1\| ferric uptake regulation protein [Escherichia coli O157:H7 str. EC4113],... FUR_ECOLI - Ferric uptake regulation protein (Ferric uptake regulator) - Escherichia coli gi\|91071299, gi\|... - gi\|91209725\|ref\|YP_539711.1\| ferric uptake regulator [Escherichia coli UTI89], gi\|91071299\|gb\|ABE061... gi\|13360172, gi\|... - gi\|15829968\|ref\|NP_308741.1\| ferric uptake regulator [Escherichia coli O157:H7 str. Sakai], gi\|13360... gi\|110342494, gi... - gi\|110640902\|ref\|YP_668630.1\| ferric uptake regulator [Escherichia coli 536], gi\|110342494\|gb\|ABG687... gi\|110804680, gi... - gi\|110804680\|ref\|YP_688200.1\| ferric uptake regulator [Shigella flexneri 5 str. 8401], gi\|110614228\|... gi\|1651290, gi\|8... - gi\|89107541\|ref\|AP_001321.1\| DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 ... gi\|75258591, gi\|... - gi\|75258591\|ref\|ZP_00729998.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli E22],... gi\|75511083, gi\|... - gi\|75511083\|ref\|ZP_00733815.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli 53638... gi\|191169350, gi... - gi\|75227331\|ref\|ZP_00714114.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli B7A],... gi\|190905744, gi... - gi\|75237566\|ref\|ZP_00721597.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Escherichia coli F11],... gi\|82543117, gi\|... - gi\|82543117\|ref\|YP_407064.1\| ferric uptake regulator [Shigella boydii Sb227], gi\|81244528\|gb\|ABB6523... gi\|74311211, gi\|... - gi\|74311211\|ref\|YP_309630.1\| ferric uptake regulator [Shigella sonnei Ss046], gi\|73854688\|gb\|AAZ8739... gi\|82775958, gi\|... - gi\|82775958\|ref\|YP_402305.1\| ferric uptake regulator [Shigella dysenteriae Sd197], gi\|81240106\|gb\|AB...	171.0	[0..2]	[137..3]
gi\|37197941, gi\|... - gi\|37679198\|ref\|NP_933807.1\| ferric uptake regulator [Vibrio vulnificus YJ016], gi\|37197941\|dbj\|BAC9...	171.0	[0..2]	[136..21]
gi\|238725407, gi... - gi\|77976359\|ref\|ZP_00831854.1\| COG0735: Fe2+/Zn2+ uptake regulation proteins [Yersinia intermedia AT...	171.0	[0..2]	[138..3]
gi\|34103108, gi\|... - gi\|34497252\|ref\|NP_901467.1\| ferric uptake regulation protein [Chromobacterium violaceum ATCC 12472]...	171.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQSELKNM GLKATFPRLK ILDIFRKSDL RHLSAEDVYR ALIAENVEIG LATVYRVLTQ  60
   61 FEQAGILTRS QFDTGKAVFE LNDGDHHDHL ICTNCGTVFE FSDPDIEKRQ YKVAKDNGFV 120
  121 LESHAMVLYG ICGNCQKGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1mzbA
Description:	Ferric uptake regulator
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits