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View Structure Prediction Details

Protein: gi|115487702, gi...
Organism: Oryza sativa Japonica Group
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115487702, gi....

Description E-value Query
Range
Subject
Range
GGAP2_ARATH - GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1
444.0 [0..3] [406..1]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMKLTIKRV PTVVSNYQED AAATAGERPR AGCGRDCLGD CCLPDSKLPL YAFKASPKKP  60
   61 SSQEDASNDE FFVNLLLGLW EDRMARGLFR YDVTACETKV IPGNLGFVAQ LNEGRHLKKR 120
  121 PTEFRVDRVL QPFDAAKFN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTKVGQEEVL FQFENGGGDD SFFVESSPIS VADRAPNVVA INVSPIEYGH VLLIPRVLDR  60
   61 LPQRIDQESF LLALHMAAEA ASPYFRLGYN SLGAFATINH LHFQAYYLTV PFPVEKAATK 120
  121 RIFL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.6
Match: 1rzyA
Description: Crystal structure of rabbit Hint complexed with N-ethylsulfamoyladenosine
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [264-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEGTMNSGVK VSKLMNYPVR GLVFEGGNSL SDLANVVSSA CIWLQDNNVP YNVLISDCGK  60
   61 KIFLFPQCYA EKQALGEVSQ ELLDTQVNPA VWEISGHIVL KRRSDYEEAS EASAWRLLAE 120
  121 VSLSEERFEE VKAYIFDAAG LVQSDEEEVS EDEDATYTPV SIAPPAVAEG CLVLQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle