YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57166763, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57166763, gi|....

Description	E-value	Query Range	Subject Range
gi\|121613360, gi... - gi\|87305943\|ref\|ZP_01088096.1\| transformation system protein [Campylobacter jejuni subsp. jejuni 81-... gi\|86152558, gi\|... - gi\|86152558\|ref\|ZP_01070763.1\| transformation system protein [Campylobacter jejuni subsp. jejuni HB9...	139.0	[0..1]	[100..1]
gi\|109691370, gi... - gi\|112805371\|gb\|EAU02715.1\| transformation system protein [Campylobacter jejuni subsp. doylei 269.97...	135.0	[0..1]	[100..1]
gi\|57168301, gi\|... - gi\|57168301\|ref\|ZP_00367440.1\| transformation system protein [Campylobacter coli RM2228], gi\|5702067...	61.0	[0..1]	[98..1]
gi\|57242170, gi\|... - gi\|57242170\|ref\|ZP_00370110.1\| transformation system protein [Campylobacter upsaliensis RM3195], gi\|...	55.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAFILIES ISAITIISLI FIGIFYYYIQ LYKNYENLNI FERLYKLQEE LYEKPIFKTI  60
   61 ILQTSALKPI VLQEQFVNDG IFQFQKLYFQ DQNYSVYFKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits