YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61360999, gi\|...
Organism:	synthetic construct
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61360999, gi|....

Description	E-value	Query Range	Subject Range
SLBP_MOUSE - Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1	413.0	[0..1]	[270..1]
gi\|189442753, gi... - gi\|195976798\|ref\|NP_001124460.1\| stem-loop binding protein [Rattus norvegicus], gi\|189442753\|gb\|AAI6...	408.0	[0..1]	[270..1]
gi\|114592841 - gi\|114592841\|ref\|XP_001144566.1\| PREDICTED: histone stem-loop binding protein isoform 3 [Pan troglod...	392.0	[0..1]	[270..1]
gi\|73951400 - gi\|73951400\|ref\|XP_545928.2\| PREDICTED: similar to stem-loop binding protein isoform 4 [Canis famili...	386.0	[0..1]	[270..1]
gi\|114053069, gi... - gi\|82571711\|gb\|AAI10147.1\| Histone stem loop binding protein [Bos taurus], gi\|114053069\|ref\|NP_00103...	353.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRPRSPPR HQSRCDGDAS PPSPARWSLG RKRRADGRRW RPEDAEEAEH RGAERRPESF  60
   61 TTPEGPKPRS RCSDWASAVE EDEMRTRVNK EMARYKRKLL INDFGRERKS SSGSSDSKES 120
  121 MST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPADFETDES VLMRRQKQIN YGKNTIAYDR YIKEVPRHLR QPGIHPKTPN KFKKYSRRSW  60
   61 DQQIKLWKVA LHFWDPPAEE GCDLQEIHPV DLESAESSSE PQTSSQDDFD VYSGTPTKVR 120
  121 HMDSQVEDEF DLEACLTEPL RDFSAMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits