| Protein: | sv-PE |
| Organism: | Drosophila melanogaster |
| Length: | 794 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sv-PE.
| Description | E-value | Query Range |
Subject Range |
|
|
491.0 | [0..1] | [755..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MLIMDIQTST HHIHGLGTHE LQHRILHPHI LHSTQEETLN TSTGQLEHDS QHLQQHHLTH 60
61 HQQQDVSPTL HNLQNTRTGD SLSTTINTNQ NQHGHQHLSG SNMYTSSQME DKSKANKYDE 120
121 YSSRTLSNIS DANTTPSANN FITQSQGIEW ITAMNDIQNG A
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-373] |
1 11 21 31 41 51
| | | | | |
1 EDSHSSQGSI SGDGHGGVNQ LGGVFVNGRP LPDVVRQRIV ELAHNGVRPC DISRQLRVSH 60
61 GCVSKILSRY YETGSFKAGV IGGSKPKVAT PPVVDAIANY KRENPTMFAW EIRDRLLAEA 120
121 ICSQDNVPSV SSINRIVRNK AAEKAKHVHH HQQHHVSQSL GGGHIATESV DSSTGTIGEP 180
181 QPPTSNSSAN SVNTNVSASA SVHASIPTSG TD
|
| Detection Method: | |
| Confidence: | 64.045757 |
| Match: | 1k78A |
| Description: | Pax-5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [374-618] |
1 11 21 31 41 51
| | | | | |
1 SVQVSVGHIN ANSNETTHIN STAEQRTTGY SINGILGIQH GHHSHNNNNN SSVNNNNNTE 60
61 SSCKRKRIEA HDENHDTNIH SDNDDGKRQR MSTYSGDQLY TNIWSGKWCI KDDHKLLAEL 120
121 GNLTASTGNC PATYYEASNG FSTTPISGSG ATASGNDTSM LYDSITTISQ TQSSIYTPAI 180
181 GPSIGTGSLT PLVPISMHEM KLSANSIQEQ TVPPFYTALA FDGNYTSMTS LENCSSLVGQ 240
241 EHIVM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [619-794] |
1 11 21 31 41 51
| | | | | |
1 PESSDSNTLC PISTRIVPDI TETNSTRVKE PLTNSDGCSE DNNKEPEKSN SSQSSDHIAS 60
61 PHLHHIGEEQ LRGNRRSNLN ASTHPSSLIP LQPSGGSSLL NINPSENRSD VELNLSNNVG 120
121 LYSTPTVLPS FNHYSAGFLY FQAAAQLYPV QITPTILHIP SMVELTDHMV TALAVA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
