YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|63086964
Organism:	Plasmodium falciparum
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|63086964.

Description	E-value	Query Range	Subject Range
gi\|7331143 - gi\|7331143\|gb\|AAF60293.1\| chaperonin 21 precursor [Lycopersicon esculentum]	242.0	[0..39]	[257..38]
gi\|50660327, gi\|... - gi\|50660327\|gb\|AAT80888.1\| chloroplast chaperonin 21 [Vitis vinifera], gi\|225444649\|ref\|XP_002276749...	241.0	[0..41]	[257..38]
gi\|21780187 - gi\|21780187\|gb\|AAM77651.1\|AF522274_1 cp10-like protein [Gossypium hirsutum]	234.0	[0..41]	[257..43]
gi\|125596360, gi... - gi\|51090748\|dbj\|BAD35228.1\| putative chaperonin 21 precursor [Oryza sativa Japonica Group], gi\|21576... gi\|125554411 - gi\|125554411\|gb\|EAZ00017.1\| hypothetical protein OsI_021249 [Oryza sativa (indica cultivar-group)]	232.0	[0..41]	[257..38]
gi\|92891804 - gi\|92891804\|gb\|ABE90963.1\| GroES-like [Medicago truncatula]	231.0	[0..16]	[256..15]
CH10C_ARATH - 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2	229.0	[0..44]	[256..43]
CH10C_SPIOL - 20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1	228.0	[0..31]	[257..32]
gi\|63086914 - gi\|63086914\|emb\|CAH04519.1\| Cpn20 protein [Plasmodium yoelii]	226.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIFLLNIV ILFLTNVLTK KHVISNTLNF INVNPKQFNN STKRLKATEY KIDNKVIRGP  60
   61 LTPLNEYILI QKDEAGDTTD SGVFIGDTLK KNQYIGKVLS VGAGAINTKN GERIPIDIQV 120
  121 GDVVIFNPND GNKVKYNDKE CLLISNEEVL GKIND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1hx5A
Description:	Chaperonin-10 (GroES)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNEINPLNIT PLYDRVLIKL INPNVNSDSL IIIPESKNND KVTDGQVVAI GNGIYDENNQ  60
   61 KVPIDLRIDD YIKFSPFSNE SCEFTYQNAK YTFVKARYVM AKY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.7
Match:	1we3O
Description:	Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits