YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|125554411

General Information:
Name(s) found: gi|125554411 [NCBI NR]
Description(s) found:
  • gi|125554411|gb|EAZ00017.1| hypothetical protein OsI_021249 [Oryza sativa (indica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVQLSGAG VAAVAFTKNG ASSFDGLRLA PPSVRVCSSR RPSRSLVVKA ATVVTPKYTS  60
   61 LKPLGDRVLV KLGAAEEKTV GGILLPSTAQ SKPQGGEVVA VGEGRTIGDK KVEVSLQIGA 120
  121 EVVYSKYAGT EVQFNDTKHL ILKEDDIIGV LETDDVKDMK PLNDRVLIKV AEAEDKTAGG 180
  181 LILTETTKEK PSIGTVVAVG PGPLDDEGKR QPLSVSAGST VMYSKYAGSE FKGADGTNYI 240
  241 VLRVSDVMAV LS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] FFAS03 5.77 Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
    2 View Details [154..252] PSI-BLAST 31.69897 Crystal structure of the Cpn10 from Thermus thermophilus HB8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chaperone binding
    		•  3.00866795811505 bayes_pls_golite062009
  • binding
    		•  2.22348182336658 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.06335826875673 bayes_pls_golite062009
  • protein binding
    		•  1.26833483736511 bayes_pls_golite062009
  • catalytic activity
    		•  0.237157551259574 bayes_pls_golite062009
    2
    Term Confidence Notes
  • chaperone binding
    		•  3.52404463833595 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.30823619318536 bayes_pls_golite062009
  • binding
    		•  2.29520443217747 bayes_pls_golite062009
  • protein binding
    		•  1.35579823286173 bayes_pls_golite062009
  • catalytic activity
    		•  0.217171374336363 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle