YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115440083, gi...
Organism: Oryza sativa Japonica Group
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115440083, gi....

Description E-value Query
Range
Subject
Range
gi|20804673, gi|... - gi|50902016|ref|XP_463441.1| P0512C01.13 [Oryza sativa (japonica cultivar-group)], dbj|BAB92361.1| P...
455.0 [0..244] [619..159]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKEQQGGG GPPPPPRAPV PAASSQPPIK KLVRQLDFTS AALAGNPAMA AAAAAVSRAL  60
   61 QPRAVPVGFP QPQQLRAHLP VGVPQQLHPR GLPVMRSHHV VHVPLPRPAV AVAVPVPQVR 120
  121 PAQPQPVPRP PVAVPLKPES PKPPRARLYE GKDGTPTKKK CCNCKHSKCL KLYCECFASG 180
  181 VYCDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNCSNCFNNV KNETARREAI DATLERNPDA FRPKIGSSPH ANRNNMEAAG DLPLVGKHNK  60
   61 GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE RKALFQGDHK NSIHMQQAAN 120
  121 AAVNGAIGAA AFSSPSASRK RKHIDPSLDH SAKENGAHRT NHVPQKNGMP SDGPLPINQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [365-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVHPPTLGPF KVTYRPLLAD IVQPGDVKEL CKLLVVVSGN AAKAYAGKKS QDKVVEKEDE  60
   61 MGGKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [430-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGEIGGSLAS TNHDREENNN DPNNQKASAD DPSTGGTRAG KASLEESKHD CNDDQKSNRP  60
   61 MSPGTLALMC DEQDTMFMTS QNVVPQQPAP VNQNQSELYA EQERCVLTEF RDCLHKLVTF 120
  121 GRMKEEKFSM AIKSEVPAHP MQANGVSRIP YSKEVDVPVV KTFLQSSSRH PAAGNSATGH 180
  181 LDKKPKHENT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle