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View Structure Prediction Details

Protein: CLB6
Organism: Saccharomyces cerevisiae
Length: 380 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLB6.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [2..373] [39..408]
gi|7271222 - gi|7271222|emb|CAB81558.1| cyclin B1 [Nicotiana tabacum]
0.0 [2..373] [39..408]
CCNB2_RANJA - G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=CCNB2 PE=2 SV=1
0.0 [11..372] [21..375]
gi|1835260 - gi|1835260|emb|CAA99990.1| mitotic cyclin [Sesbania rostrata]
0.0 [9..373] [77..434]
gi|13605768 - gi|13605768|gb|AAK32876.1| cyclin B2 [Rana dybowskii]
0.0 [11..372] [21..377]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
0.0 [14..373] [87..440]
gi|117645974 - gi|117645974|emb|CAL38454.1| hypothetical protein [synthetic construct]
HGNC:1580|MIM:60... - B2
CCNB2, CGB2 - chorionic gonadotropin, beta polypeptide 2, cyclin B2
0.0 [2..372] [15..380]
CCNB2_BOVIN - G2/mitotic-specific cyclin-B2 OS=Bos taurus GN=CCNB2 PE=2 SV=2
0.0 [2..372] [15..380]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCIPSPISE RKIQINNEDC IGKENAFHTI PRESSINLTP HSTNEKKVLS EVNSNKIDSL  60
   61 QLPRGKLQRD STHLEKTRKR QLSNDSTDPI E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKTVKKIKCH QWKNLDSIEM DDPFMVAEYT DSIFSHLYE

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [256-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNFIRRISK ADNYCIETRN MAKFIMEYSI CCNKFIHLKP SYLAAMSMYI ARKIKNENSK  60
   61 WDETFIHYSG GIDIESDPAF KDFISELVED IAVPDTNLDS LRLKYKKPKH GMVYFKVFDW 120
  121 CKQKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 328.855515
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [131-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEIQMLPTHN YLMDTQSPYH LKSSMRALLI DWLVEVHEKF HCLPETLFLA INLLDRFLSQ  60
   61 NVVKLNKLQL LCITCLFIAC KFEEVKLPKI TNFAYVTDGA ATVEGIRKAE LFVLSSLGYN 120
  121 ISLPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 328.855515
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle