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View Structure Prediction Details

Protein: SAM35
Organism: Saccharomyces cerevisiae
Length: 329 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAM35.

Description E-value Query
Range
Subject
Range
SAM35_YEAST - Sorting assembly machinery 35 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
SAM35 - Essential component of the sorting and assembly machinery (SAM complex or TOB complex) of the mitoch...
gi|151944030 - gi|151944030|gb|EDN62323.1| SAM complex subunit [Saccharomyces cerevisiae YJM789]
0.0 [1..329] [1..329]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSFSVPMP VKRIFDTFPL QTYAAQTDKD EAVALEIQRR SYTFTERGGG SSELTVEGTY  60
   61 KLGVYNVFLE ANTGAALATD PWCLFVQLAL CQKNGLVLPT HSQEQTPSHT C

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHEMLVLSRL SNPDEALPIL VEGYKKRIIR STVAISEIMR SRILDDAEQL MYYTLLDTVL  60
   61 YDCWITQIIF CASDAQFMEL YSCQKLSGSI VTPLDVENSL LQKLSAKSLK ISLTKRNKFQ 120
  121 FRHREIVKSM QGVYHNHHNS VNQEQVLNVL FENSKQVLLG LKDMLKSDGQ PTYLHLKIAS 180
  181 YILCITNVKE PIKLKTFVEN ECKELVQFAQ DTLKNFVQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle