| Protein: | SIP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 829 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIP4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..829] | [1..829] |
|
|
0.0 | [1..829] | [1..829] |
|
|
4.0E-74 | [15..386] | [39..432] |
|
|
4.0E-67 | [15..386] | [22..418] |
|
|
9.0E-53 | [4..402] | [3..409] |
|
|
5.0E-42 | [25..302] | [2..305] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MAKRKYGRSY SLDDTDSCSN KVLIVPTGQS SSNAITDFSV RKAHACDRCR LKKIKCDGLK 60
61 PNCSNCAKID FPCKTSDKLS RRGLPKGYTE LLEKEVVRLT NMNASSSANA NSNLPFINDT 120
121 FYCFDNYNTQ SENQRFLGHL TWNILTNTFP TQKAVVFTDD RNNIDLQLQL LTNFLN
|
| Detection Method: |  |
| Confidence: | 105.30103 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 1.89281746291341 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
|
Region A: Residues: [177-829] |
1 11 21 31 41 51
| | | | | |
1 LNGDFNHLPN FLLLKYDYNL QFLKNLLSVI IKDFFKRQNS LLLLLYPTNL WKNLLLDKIN 60
61 STAMTGEPIT LLALLYIIQF TWSCFDDFKL FKVTKLIVSL TTNSKLDLKV LQLVNLSIFY 120
121 FMGASVDSCK SKSSLTEHSN VNSVIWTNDL LNLNFTNILN MGLYINPKNL IPISGNNNNN 180
181 KSNEEDDRIV TFWCFQFLSS WWSLIQGLPK SNFLTEEFQP KSISVLEIPR LKPFEILLNF 240
241 IIYSLDGCNL LNISSLNVSD PNFQFFQNEL ESFKKNLLLW NLYHNLSDHD NFRFLTSSSN 300
301 KKLTTNLLLK NLTGLNHKLN QPDFVEIQLT LFYLSLKLMT LKEGDQDLKK EDISLEILSL 360
361 YFLILTDDSN NDDNQQLQPQ QLNLYHFTPF NSIDIIDLCL NNLNNWSLSL KYESGQNQPH 420
421 SSKIKFEKFQ NFLNHWCPIW YYDEFSTNPF LQILKINFKL LPFETIHYSQ EEQRLLISLN 480
481 KLRYLDAVSS FNSSSVKSNF ASKVNTQLNL LQHSSSNSNF LDASPYDFNK IFMNNFENYD 540
541 YETDEGYAED DDEEDSDSDN SLPLEIPFKK SKNKCKNRNK ELSQRLSLFE NRDSNSVDFN 600
601 TDTNLNLNPD SPSVTSSKKK YLDHIILDNR DIVSNHDSSK QKFKIQNILN STF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
