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View Structure Prediction Details

Protein: YKR041W
Organism: Saccharomyces cerevisiae
Length: 250 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR041W.

Description E-value Query
Range
Subject
Range
gi|2131123 - gi|2131123|emb|CAA82115.1| unnamed protein product [Saccharomyces cerevisiae]
212.0 [0..15] [123..15]
gi|44983036, gi|... - gi|45188192|ref|NP_984415.1| ADR319Wp [Ashbya gossypii ATCC 10895], gi|44983036|gb|AAS52239.1| ADR31...
gi|44983036 - gi|44983036|gb|AAS52239.1| ADR319Wp [Ashbya gossypii ATCC 10895]
61.0 [0..95] [247..91]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDDYMNSD DDNDAEKRYV RPIFVRKRRR EEDYVATSKD NIHHHPCDWS AKPSQRQNEN  60
   61 EQKSTIRLVP VAMNTPKCQE KKKKRKGVGT TSHEATLFEY GESIAGYKCV TTESERDRLK 120
  121 RSHESESSSE SEVDVFAFDQ AKGISSKVEA EERYARAVRQ YWRMTKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [168-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPATLPLPGT PTLAAVSLDM IDDKSVEQFY TMSSALMDAN RLDLIRRDRI RWHPDKHRYH  60
   61 KSKVTKLFQA INGLWEQEKT EKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.975 a.47.2 t-snare proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle