YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2498728, gi\|2...
Organism:	Saccharomyces cerevisiae
Length:	86 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2498728, gi|2....

Description	E-value	Query Range	Subject Range
OST5 - Zeta subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-li... OST5_YEAST - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST5 OS=Saccharomyces cerevis...	116.0	[0..1]	[86..1]
gi\|44984769, gi\|... - gi\|45198759\|ref\|NP_985788.1\| AFR241Wp [Ashbya gossypii ATCC 10895], gi\|44984769\|gb\|AAS53612.1\| AFR24... gi\|44984769 - gi\|44984769\|gb\|AAS53612.1\| AFR241Wp [Ashbya gossypii ATCC 10895]	114.0	[0..5]	[86..24]
gi\|49640185, gi\|... - gi\|50302241\|ref\|XP_451054.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640185\|emb\|CAH0264...	85.0	[0..12]	[86..4]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYEQLYKEF HSSKSFQPFI HLDTQPKFAI CGLIVTLAVL SSALFTVGSK SSYIKKLFFY  60
   61 TILSVIGSLF AGLTTVFASN SFGVYV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.810	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits