YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89049064, gi\|...
Organism:	Photobacterium sp. SKA34
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89049064, gi|....

Description	E-value	Query Range	Subject Range
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	199.0	[0..1]	[124..19]
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	199.0	[0..1]	[124..42]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	195.0	[0..1]	[123..13]
gi\|69216533 - gi\|69216533\|gb\|AAZ03932.1\| ribosomal protein S12 [Ginkgo biloba]	194.0	[0..1]	[123..1]
gi\|145640559, gi... - gi\|145640559\|ref\|ZP_01796143.1\| 30S ribosomal protein S7 [Haemophilus influenzae R3021], gi\|14498248... RS12_HAEIE - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain PittEE) GN=rpsL PE=3 SV=1 gi\|145268858, gi... - gi\|145637944\|ref\|ZP_01793585.1\| 30S ribosomal protein S7 [Haemophilus influenzae PittHH], gi\|1452688... gi\|145638509, gi... - gi\|145638509\|ref\|ZP_01794118.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|144985831, gi... - gi\|145633462\|ref\|ZP_01789191.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|145266881, gi... - gi\|145635869\|ref\|ZP_01791559.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ha... gi\|145629759, gi... - gi\|145629759\|ref\|ZP_01785554.1\| 30S ribosomal protein S7 [Haemophilus influenzae 22.1-21], gi\|144977... gi\|145275145, gi... - gi\|145640559\|ref\|ZP_01796143.1\| 30S ribosomal protein S7 [Haemophilus influenzae R3021], gi\|14563188... RS12_HAEIN - 30S ribosomal protein S12 OS=Haemophilus influenzae GN=rpsL PE=3 SV=2 RS12_ACTP7 - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsL PE=3 S... gi\|42630028 - gi\|42630028\|ref\|ZP_00155573.1\| COG0048: Ribosomal protein S12 [Haemophilus influenzae R2846] gi\|42630860 - gi\|42630860\|ref\|ZP_00156399.1\| COG0048: Ribosomal protein S12 [Haemophilus influenzae R2866] RS12_MANHA - 30S ribosomal protein S12 OS=Mannheimia haemolytica GN=rpsL PE=3 SV=2 RS12_HAEIN - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RS12_HAEIG - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain PittGG) GN=rpsL PE=3 SV=1 gi\|251793283, gi... - gi\|251793283\|ref\|YP_003008011.1\| ribosomal protein S12 [Aggregatibacter aphrophilus NJ8700], gi\|2475... gi\|240950123, gi... - gi\|240950123\|ref\|ZP_04754416.1\| 30S ribosomal protein S12 [Actinobacillus minor NM305], gi\|240295392... gi\|229809646, gi... - gi\|229847408\|ref\|ZP_04467508.1\| 30S ribosomal protein S12 [Haemophilus influenzae 7P49H1], gi\|229809... gi\|229811399, gi... - gi\|229845661\|ref\|ZP_04465785.1\| 30S ribosomal protein S12 [Haemophilus influenzae 6P18H1], gi\|229811... RS12_ACTPJ - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsL PE=3 S... RS12_HAEI8 - 30S ribosomal protein S12 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsL PE=3 SV=1 RS12_ACTP2 - 30S ribosomal protein S12 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsL PE=3 S...	194.0	[0..1]	[124..1]
RS12_HISS2 - 30S ribosomal protein S12 OS=Histophilus somni (strain 2336) GN=rpsL PE=3 SV=1 RS12_HAES1 - 30S ribosomal protein S12 OS=Haemophilus somnus (strain 129Pt) GN=rpsL PE=3 SV=1	194.0	[0..1]	[124..1]
RS12_CUPPJ - 30S ribosomal protein S12 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpsL PE=3 SV=...	193.0	[0..1]	[124..1]
RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain CMCP6) GN=rpsL PE=3 SV=1 RS12_VIBVY - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain YJ016) GN=rpsL PE=3 SV=1 RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus GN=rpsL PE=3 SV=1	193.0	[0..1]	[124..1]
RS12_HAEDU - 30S ribosomal protein S12 OS=Haemophilus ducreyi GN=rpsL PE=3 SV=1 RS12_HAEDU - 30S ribosomal protein S12 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rpsL PE=3 SV=1	193.0	[0..1]	[124..1]
gi\|24114606, gi\|... - ref\|NP_709116.1\| 30S ribosomal subunit protein S12 [Shigella flexneri 2a str. 301], gb\|AAN44823.1\| ... gi\|26249940, gi\|... - gi\|26249940\|ref\|NP_755980.1\| 30S ribosomal protein S12 [Escherichia coli CFT073], gi\|26110368\|gb\|AAN... gi\|226902337, gi... - gi\|237703073\|ref\|ZP_04533554.1\| 30S ribosomal subunit protein S12 [Escherichia sp. 3_2_53FAA], gi\|22... gi\|254038504, gi... - gi\|254038504\|ref\|ZP_04872560.1\| 30S ribosomal subunit protein S12 [Escherichia sp. 1_1_43], gi\|22683... gi\|91074392, gi\|... - gi\|91212818\|ref\|YP_542804.1\| 30S ribosomal subunit protein S12 [Escherichia coli UTI89], gi\|91074392...	193.0	[0..1]	[124..21]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATINQLVRK PRAKQVVKSN VPALEACPQK RGVCTRVYTT TPKKPNSALR KVCRVRLTNG  60
   61 FEVTSYIGGE GHNLQEHSVV LIRGGRVKDL PGVRYHTVRG ALDCAGVNDR KQGRSKYGVK 120
  121 RPKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1vs5L
Description:	No description for 1vs5L was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
misfolded RNA binding	4.4877915495248	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
RNA binding	3.30183895019873	bayes_pls_golite062009
DNA binding	2.94486937698231	bayes_pls_golite062009
	2.80746531284205	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
mRNA binding	1.65819015373151	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
transcription regulator activity	1.24522359765541	bayes_pls_golite062009
protein binding	1.20309946451799	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
ribonuclease activity	0.91658673456122	bayes_pls_golite062009
transcription factor activity	0.672797026326101	bayes_pls_golite062009
transcription activator activity	0.581984534552921	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.438266295385131	bayes_pls_golite062009
exoribonuclease activity	0.39131721416336	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
transcription factor binding	0.132487446755259	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.0717589400404304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: