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View Structure Prediction Details

Protein: gi|113612039, gi...
Organism: Oryza sativa Japonica Group
Length: 730 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113612039, gi....

Description E-value Query
Range
Subject
Range
gi|50510128, gi|... - gi|50510128|dbj|BAD31094.1| hypothetical protein [Oryza sativa Japonica Group], gi|34899018|ref|NP_9...
966.0 [0..1] [730..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRCRVAY VVLAALAAAP FLLLLLYGGG SPSALCLAAA RSGGASRRLQ YPSVAWSRVP  60
   61 PLPVLPSSPL PSLRASRWII FAAAAHHPRH RPLPAVPGWQ LLAVADETTP PDWSHPGAAL 120
  121 LTLADQARLG FRSVAFLPAR GHARKAAAYL FAVQRGARVI YDADARNAVL GSNLTKHFDV 180
  181 DLDHRQGGGV LLQYSHADPN RTVVNPYVH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGQPSVWPRG LPLHKAGEVG VEEFYTQVFG GGQFIQQGLC NGLPDVDAVF YFTRKSSEME  60
   61 AFDLRFDADA PKVALPQGMM APINSVNTLF HSPAFWGLAL PVSVSPMAAD VIRGYWSQRI 120
  121 LWEIGGYLVV YPPTVHRMDN VHAHPFDDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [359-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDIHVSVGRL IDFLMEWRSH KQTLFERILD LSYAMTEEGF WGEKDLQFMS AWLQDLVSVG  60
   61 YRQPRLMSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [428-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIDRPRATIG HGDKQVFVPK KLPTVHLGVE EIGEVSTEIG NLIKWRKHFG DVVLIVHCTV  60
   61 PVDRVALEWR LLYGRIFRAV VILSEKSNSD LAVEVSNLAQ AYKFLPKVFD RFAGAGGFMF 120
  121 LQDHMILNYW NLYDFDKAKL WITNKVKESW SDVPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [583-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGNKIEWFIN QGDMVKKAIA SFPFQYQANY KRSVGEDKII HCNSEIFYIP RSHIGDFSYL  60
   61 VQAIGSLDIH HSIAIPMLFL AMDLPSNFES KALTKLIYRT NVQSNATFAT IYTAQAHAVY 120
  121 PMKVQNEIDF VELIRVMASG DPFLMELI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle