YRC Public Data Repository - Protein Structure Prediction

Protein:	TNG2_MOUSE
Organism:	Mus musculus
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TNG2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109451848, gi... - gi\|109451848\|emb\|CAK54795.1\| C22orf25 [synthetic construct], gi\|109451270\|emb\|CAK54496.1\| C22orf25 [... HGNC:25439\|Ensem... - 22 open reading frame 25 C22orf25 - chromosome 22 open reading frame 25	445.0	[0..1]	[276..1]
gi\|74219739, gi\|... - gi\|74227275\|dbj\|BAE21736.1\| unnamed protein product [Mus musculus], gi\|74219739\|dbj\|BAE40462.1\| unna...	436.0	[0..1]	[276..1]
gi\|73995915 - gi\|73995915\|ref\|XP_850154.1\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...	431.0	[0..1]	[276..1]
gi\|149019786, gi... - gi\|62658192\|ref\|XP_341011.2\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...	429.0	[0..1]	[276..1]
TNG2_BOVIN - Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1	414.0	[0..1]	[276..1]
gi\|56119064, gi\|... - gi\|56119064\|ref\|NP_001007837.1\| hypothetical protein LOC416784 [Gallus gallus], gi\|53136540\|emb\|CAG3...	399.0	[0..1]	[274..1]
gi\|52345676, gi\|... - gi\|52345676\|ref\|NP_001004885.1\| MGC88919 protein [Xenopus (Silurana) tropicalis], gi\|49522958\|gb\|AAH...	389.0	[0..1]	[275..1]
gi\|39645613, gi\|... - gi\|39645613\|gb\|AAH63724.1\| MGC68627 protein [Xenopus laevis], gi\|148228476\|ref\|NP_001083694.1\| hypot...	387.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIIFFKFDP RPVSKNAYRL ILAANRDEFY NRPSKLADFW GNNSEILSGL DMEEGKAGGT  60
   61 WLGISTRGKL GALTNYLQPR QEPDARGRGE LVSHFLTSDM DSLSYLKKVS TEGHLYNGFN 120
  121 IIAADLSTSK GDVVCYYGNR GEPEPIVLTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTYGLSNALL ETPWKKLCFG KQLFMEAVEQ SEALPKDVLV TQLLDVLNNE EAQLPDPAIE  60
   61 DQGQEYVQPI LNKYAAVWCR CASYGTRTNT IILVDANGHV TFTERSMLDK DTSRWETNTY 120
  121 EFTLQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits