YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109094045, gi...
Organism:	Macaca mulatta
Length:	548 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109094045, gi....

Description	E-value	Query Range	Subject Range
EIF3D_RAT - Eukaryotic translation initiation factor 3 subunit D OS=Rattus norvegicus GN=Eif3d PE=1 SV=1 EIF3D_MOUSE - Eukaryotic translation initiation factor 3 subunit D OS=Mus musculus GN=Eif3d PE=1 SV=2	0.0	[1..529]	[1..529]
EIF3D_BOVIN - Eukaryotic translation initiation factor 3 subunit D OS=Bos taurus GN=EIF3D PE=2 SV=1	0.0	[1..529]	[1..529]
gi\|114686220 - gi\|114686220\|ref\|XP_001158987.1\| PREDICTED: eukaryotic translation initiation factor 3 subunit 7 iso...	0.0	[1..529]	[1..529]
gi\|73969188 - gi\|73969188\|ref\|XP_850595.1\| PREDICTED: similar to eukaryotic translation initiation factor 3 subuni...	0.0	[1..529]	[1..529]
gi\|119580514 - gi\|119580514\|gb\|EAW60110.1\| eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa, is... gi\|109094049 - gi\|109094049\|ref\|XP_001083790.1\| PREDICTED: similar to eukaryotic translation initiation factor 3 su...	0.0	[1..529]	[1..529]
gi\|26337171 - gi\|26337171\|dbj\|BAC32270.1\| unnamed protein product [Mus musculus]	0.0	[1..529]	[1..529]
IF37_PONPY - Eukaryotic translation initiation factor 3 subunit 7 - Pongo pygmaeus (Orangutan) EIF3D_PONAB - Eukaryotic translation initiation factor 3 subunit D OS=Pongo abelii GN=EIF3D PE=2 SV=1	0.0	[1..529]	[1..529]
EIF3D_MACFA - Eukaryotic translation initiation factor 3 subunit D OS=Macaca fascicularis GN=EIF3D PE=2 SV=1	0.0	[1..529]	[1..529]

Back

Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFMTPVIQ DNPSGWGPCA VPEQFRDMPY QPFSKGDRLG KVADWTGATY QDKRYTNKYS  60
   61 SQFGGGSQYA YFHEEDESSF QLVDTARTQK TAYQRNRMRF AQRNLRRDKD RRNMLQFNLQ 120
  121 ILPKSAKQKE RERIRLQKKF QKQFGVRQKW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQKSQKPRDS SVEVRSDWEV KEEMDFPQLM KMRYLEVSEP QDIECCGALE YYDKAFDRIT  60
   61 TRSEKPLRSI KRIFHTVTTT DDPVIRKLAK TQGNVFATDA ILATLMSCTR SVYSWDIVVQ 120
  121 RVGSKLFFDK RDNSDFDLLT VS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [293-548]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETANEPPQDE GNSFNSPRNL AMEATYINHN FSQQCLRMGK ERYNFPNPNP FVEDDMDKNE  60
   61 IASVAYRYRR WKLGDDIDLI VRCEHDGVMT GANGEVSFIN IKTLNEWDSR HCNGVDWRQK 120
  121 LDSQRGAVIA TELKNNSYKL ARWTCCALLA GSEYLKLGYV SRYHVKDSSR HVILGTQQFK 180
  181 PNEFASQINL SVENAWGILR CVIDICMKLE EGKYLILKDP NKQVIRVYSL PDGTFSSDED 240
  241 EEEEEEEEEE EEEEET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits