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View Structure Prediction Details

Protein: CCL11_MOUSE
Organism: Mus musculus
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL11_MOUSE.

Description E-value Query
Range		 Subject
Range
CCL7_RAT - C-C motif chemokine 7 OS=Rattus norvegicus GN=Ccl7 PE=3 SV=1
 120.0 [0..1] [97..1]
gi|21070221, gi|... - gi|21070221|gb|AAM34214.1|AF506972_1 mcp-2 [Equus caballus], gi|126352332|ref|NP_001075333.1| mcp-2 ...
 120.0 [0..1] [97..1]
gi|28894125 - gi|28894125|gb|AAO52735.1| monocyte chemoattractant protein-3 [Macaca nemestrina]
 120.0 [0..2] [96..12]
gi|631586 - gi|631586|pir||JC2336 monocyte chemoattractant protein-1 - bovine
CCL2_BOVIN - C-C motif chemokine 2 OS=Bos taurus GN=CCL2 PE=3 SV=1
 116.0 [0..1] [97..1]
CCL2_RABIT - C-C motif chemokine 2 OS=Oryctolagus cuniculus GN=CCL2 PE=2 SV=1
 116.0 [0..1] [96..1]
CCL13 - chemokine (C-C motif) ligand 13
gi|60654807, gi|... - gi|60654809|gb|AAX31969.1| chemokine (C-C motif) ligand 13 [synthetic construct], gi|60654807|gb|AAX...
 114.0 [0..1] [96..1]
gi|4115613 - gi|4115613|dbj|BAA36456.1| Monocyte Chemoattractant Protein-3 (MCP-3) [Cavia porcellus]
 112.0 [0..1] [96..1]

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Predicted Domain #1
Region A:
Residues: [1-97] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSTALLFL LLTVTSFTSQ VLAHPGSIPT SCCFIMTSKK IPNTLLKSYK RITNNRCTLK  60
   61 AIVFKTRLGK EICADPKKKW VQDATKHLDQ KLQTPKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1bo0A
Description: MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.3900020421144 bayes_pls_golite062009
protein binding 1.08080878723934 bayes_pls_golite062009
receptor binding 0.76867241822245 bayes_pls_golite062009
cytokine activity 0.53309192942479 bayes_pls_golite062009
G-protein-coupled receptor binding 0.32020721127886 bayes_pls_golite062009
chemokine activity 0.26786878228995 bayes_pls_golite062009
chemokine receptor binding 0.26786878228995 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle