| Protein: | TNF10_MOUSE |
| Organism: | Mus musculus |
| Length: | 291 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TNF10_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..1] | [291..1] |
|
|
307.0 | [0..1] | [287..1] |
|
|
299.0 | [0..9] | [290..9] |
|
|
299.0 | [0..9] | [290..9] |
|
|
297.0 | [0..9] | [290..9] |
|
|
295.0 | [0..12] | [290..8] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MPSSGALKDL SFSQHFRMMV ICIVLLQVLL QAVSVAVTYM YFTNEMKQLQ DNYSKIGLAC 60
61 FSKTDEDFWD STDGEILNRP CLQVKRQLYQ LIEEVTLRTF QDT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-291] |
1 11 21 31 41 51
| | | | | |
1 ISTVPEKQLS TPPLPRGGRP QKVAAHITGI TRRSNSALIP ISKDGKTLGQ KIESWESSRK 60
61 GHSFLNHVLF RNGELVIEQE GLYYIYSQTY FRFQEAEDAS KMVSKDKVRT KQLVQYIYKY 120
121 TSYPDPIVLM KSARNSCWSR DAEYGLYSIY QGGLFELKKN DRIFVSVTNE HLMDLDQEAS 180
181 FFGAFLIN
|
| Detection Method: | |
| Confidence: | 52.522879 |
| Match: | 1dg6A |
| Description: | Apoptosis-2 ligand, apo2l/TRAIL |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 3.37824597039547 | bayes_pls_golite062009 |
| tumor necrosis factor receptor superfamily binding | 2.2657673851253 | bayes_pls_golite062009 |
| protein binding | 2.25413201891408 | bayes_pls_golite062009 |
| binding | 1.55055236820725 | bayes_pls_golite062009 |
| tumor necrosis factor receptor binding | 1.07319043778379 | bayes_pls_golite062009 |
| cytokine activity | 0.82341093302063 | bayes_pls_golite062009 |
