YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153216661, gi...
Organism:	Vibrio cholerae 1587
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153216661, gi....

Description	E-value	Query Range	Subject Range
RL9_PHOLL - 50S ribosomal protein L9 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565... RL9_PHOLL - 50S ribosomal protein L9 OS=Photorhabdus luminescens subsp. laumondii GN=rplI PE=3 SV=1	184.0	[0..1]	[149..1]
RL9_HAES1 - 50S ribosomal protein L9 OS=Haemophilus somnus (strain 129Pt) GN=rplI PE=3 SV=1 RL9_HISS2 - 50S ribosomal protein L9 OS=Histophilus somni (strain 2336) GN=rplI PE=3 SV=1	182.0	[0..1]	[149..1]
RL9_THIDA - 50S ribosomal protein L9 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplI PE=3 SV=1	180.0	[0..1]	[149..1]
RL9_ACTSZ - 50S ribosomal protein L9 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplI PE=3 SV=1	180.0	[0..1]	[149..1]
gi\|238783556, gi... - gi\|77958752\|ref\|ZP_00822780.1\| COG0359: Ribosomal protein L9 [Yersinia bercovieri ATCC 43970], gi\|23...	180.0	[0..1]	[149..1]
RL9_SHIDS - 50S ribosomal protein L9 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplI PE=3 SV=1	180.0	[0..1]	[149..1]
gi\|208733544, gi... - gi\|208812267\|ref\|ZP_03253596.1\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208728049, gi... - gi\|208808248\|ref\|ZP_03250585.1\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4206], gi\|2087... RL9_ECO5E - 50S ribosomal protein L9 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplI PE=3 SV=1 gi\|208739520, gi... - gi\|208819397\|ref\|ZP_03259717.1\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4042], gi\|2087... RL9_ECO27 - 50S ribosomal protein L9 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplI PE=3 SV=1 RL9_ECOSE - 50S ribosomal protein L9 OS=Escherichia coli (strain SE11) GN=rplI PE=3 SV=1 RL9_ESCF3 - 50S ribosomal protein L9 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=... gi\|217321987, gi... - gi\|217325766\|ref\|ZP_03441850.1\| ribosomal protein L9 [Escherichia coli O157:H7 str. TW14588], gi\|217... sp\|B7UQL2\|RL9_ECO27 - 50S ribosomal protein L9 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplI PE=3 SV=1 gi\|189010201, gi... - gi\|189010201\|ref\|ZP_02805643.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4076], gi\|1890... gi\|188025166, gi... - gi\|188025166\|ref\|ZP_02776467.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4113], gi\|1880... gi\|189402833, gi... - gi\|189402833\|ref\|ZP_02791490.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4486], gi\|1893... gi\|189402051, gi... - gi\|189402051\|ref\|ZP_02779782.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4401], gi\|1893... gi\|189404601, gi... - gi\|189404601\|ref\|ZP_02809848.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC869], gi\|18937... gi\|189403833, gi... - gi\|189403833\|ref\|ZP_02785453.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4501], gi\|1893... gi\|195935993 - gi\|195935993\|ref\|ZP_03081375.1\| 50S ribosomal protein L9 [Escherichia coli O157:H7 str. EC4024] gi\|189406182, gi... - gi\|189406182\|ref\|ZP_02826866.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC508], gi\|18937... gi\|15834433, gi\|... - gi\|15834433\|ref\|NP_313206.1\| 50S ribosomal protein L9 [Escherichia coli O157:H7 str. Sakai], gi\|1336... RL9_ECO45 - 50S ribosomal protein L9 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplI PE=3 SV=1 RL9_ECOL5 - 50S ribosomal protein L9 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplI PE=3 SV=1 RL9_ECO8A - 50S ribosomal protein L9 OS=Escherichia coli O8 (strain IAI1) GN=rplI PE=3 SV=1 RL9_SHIF8 - 50S ribosomal protein L9 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplI PE=3 SV=1 RL9_ECO55 - 50S ribosomal protein L9 OS=Escherichia coli (strain 55989 / EAEC) GN=rplI PE=3 SV=1 RL9_ECO81 - 50S ribosomal protein L9 OS=Escherichia coli O81 (strain ED1a) GN=rplI PE=3 SV=1 RL9_ECOLU - 50S ribosomal protein L9 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplI PE=3 SV=1 RL9_ECO7I - 50S ribosomal protein L9 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplI PE=3 SV=1 RL9_ECOUT - 50S ribosomal protein L9 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplI PE=3 SV=1 gi\|157836115 - gi\|157836115\|pdb\|2QOX\|H Chain H, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli I... RL9_ECOK1 - 50S ribosomal protein L9 OS=Escherichia coli O1:K1 / APEC GN=rplI PE=3 SV=1 gi\|124528262, gi... - gi\|124528262\|ref\|ZP_01699586.1\| ribosomal protein L9 [Escherichia coli B], gi\|124500704\|gb\|EAY48174.... RL9_ECOSM - 50S ribosomal protein L9 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplI PE=3 SV=1 RL9_ECODH - 50S ribosomal protein L9 OS=Escherichia coli (strain K12 / DH10B) GN=rplI PE=3 SV=1 gi\|187775896, gi... - gi\|187775896\|ref\|ZP_02799091.2\| ribosomal protein L9 [Escherichia coli O157:H7 str. EC4196], gi\|1877... gi\|170766960, gi... - gi\|170766960\|ref\|ZP_02901413.1\| ribosomal protein L9 [Escherichia albertii TW07627], gi\|170124398\|gb... RL9_ECOLI - 50S ribosomal protein L9 - Escherichia coli RL9_SHIFL - 50S ribosomal protein L9 OS=Shigella flexneri GN=rplI PE=3 SV=1 gi\|192926349, gi... - gi\|75255929\|ref\|ZP_00727661.1\| COG0359: Ribosomal protein L9 [Escherichia coli E22], gi\|193066026\|re... gi\|24054887, gi\|... - gi\|24115556\|ref\|NP_710066.1\| 50S ribosomal protein L9 [Shigella flexneri 2a str. 301], gi\|24054887\|g... gi\|75515439, gi\|... - gi\|75515439\|ref\|ZP_00737596.1\| COG0359: Ribosomal protein L9 [Escherichia coli 53638], gi\|188496272\|... RL9_ECOL6 - 50S ribosomal protein L9 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rplI PE=3... gi\|75234249, gi\|... - gi\|75234249\|ref\|ZP_00718637.1\| COG0359: Ribosomal protein L9 [Escherichia coli E110019], gi\|19307086... gi\|30065574, gi\|... - gi\|30065574\|ref\|NP_839745.1\| 50S ribosomal protein L9 [Shigella flexneri 2a str. 2457T], gi\|30043838... gi\|191170809, gi... - gi\|75242408\|ref\|ZP_00726170.1\| COG0359: Ribosomal protein L9 [Escherichia coli F11], gi\|191170809\|re... RL9_ECO57 - 50S ribosomal protein L9 OS=Escherichia coli O157:H7 GN=rplI PE=3 SV=1 gi\|89110923, gi\|... - gi\|89110923\|ref\|AP_004703.1\| 50S ribosomal subunit protein L9 [Escherichia coli str. K-12 substr. W3... EG10870 - 50S ribosomal subunit protein L9 / 50S ribosomal subunit protein L9 gi\|12519194, gi\|... - gi\|15804792\|ref\|NP_290833.1\| 50S ribosomal protein L9 [Escherichia coli O157:H7 EDL933], gi\|12519194... RL9_SHISS - 50S ribosomal protein L9 OS=Shigella sonnei (strain Ss046) GN=rplI PE=3 SV=1 RL9_ECOLC - 50S ribosomal protein L9 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplI PE=3 SV=... RL9_SHIBS - 50S ribosomal protein L9 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplI PE=3 SV=1 gi\|194421550, gi... - gi\|83585060\|ref\|ZP_00923713.1\| COG0359: Ribosomal protein L9 [Escherichia coli 101-1], gi\|194439551\|... RL9_SHIB3 - 50S ribosomal protein L9 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplI PE=3 SV... gi\|75212246, gi\|... - gi\|75212246\|ref\|ZP_00712286.1\| COG0359: Ribosomal protein L9 [Escherichia coli B171], gi\|194426506\|r... gi\|190904364, gi... - gi\|75231205\|ref\|ZP_00717612.1\| COG0359: Ribosomal protein L9 [Escherichia coli B7A], gi\|191165669\|re... RL9_ECO24 - 50S ribosomal protein L9 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplI PE=3 SV=1 RL9_ECOHS - 50S ribosomal protein L9 OS=Escherichia coli O9:H4 (strain HS) GN=rplI PE=3 SV=1 gi\|227836326, gi... - gi\|227886753\|ref\|ZP_04004558.1\| 50S ribosomal protein L9 [Escherichia coli 83972], gi\|227836326\|gb\|E... gi\|237703871, gi... - gi\|237703871\|ref\|ZP_04534352.1\| ribosomal protein L9 [Escherichia sp. 3_2_53FAA], gi\|226901783\|gb\|EE... RL9_ECOBW - 50S ribosomal protein L9 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rplI PE=3 SV=1 gi\|251787451, gi... - gi\|251787451\|ref\|YP_003001755.1\| hypothetical protein B21_04032 [Escherichia coli BL21], gi\|24237972... EG10870 - 50S ribosomal subunit protein L9 / 50S ribosomal subunit protein L9 gi\|253775172, gi... - gi\|254290882\|ref\|YP_003056630.1\| 50S ribosomal protein L9 [Escherichia coli BL21(DE3)], gi\|253980189... gi\|226840329, gi... - gi\|254037223\|ref\|ZP_04871300.1\| 50S ribosomal protein L9 [Escherichia sp. 1_1_43], gi\|226840329\|gb\|E... gi\|254164132, gi... - gi\|254164132\|ref\|YP_003047240.1\| 50S ribosomal protein L9 [Escherichia coli B str. REL606], gi\|25397... gi\|254796222, gi... - gi\|254796222\|ref\|YP_003081059.1\| 50S ribosomal subunit protein L9 [Escherichia coli O157:H7 str. TW1... RL9_ECOL6 - 50S ribosomal protein L9 OS=Escherichia coli O6 GN=rplI PE=3 SV=1	180.0	[0..1]	[149..1]
gi\|213981554 - gi\|213981554\|ref\|ZP_03408813.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|214003332 - gi\|214003332\|ref\|ZP_03414067.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALPC - 50S ribosomal protein L9 OS=Salmonella paratyphi C (strain RKS4594) GN=rplI PE=3 SV=1 RL9_SALTI - 50S ribosomal protein L9 OS=Salmonella typhi GN=rplI PE=3 SV=1 gi\|16763211 - gi\|16763211\|ref\|NP_458828.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serovar T... gi\|29144690, gi\|... - gi\|29144690\|ref\|NP_808032.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serovar T... gi\|238910551 - gi\|238910551\|ref\|ZP_04654388.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis (strain SC-B67) GN=rplI PE=3 SV=1 RL9_SALTI - 50S ribosomal protein L9 OS=Salmonella typhi GN=rplI PE=3 SV=1 RL9_SALPA - 50S ribosomal protein L9 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplI PE=3 SV=1 RL9_SALAR - 50S ribosomal protein L9 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplI ... gi\|213428640 - gi\|213428640\|ref\|ZP_03361390.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213582063 - gi\|213582063\|ref\|ZP_03363889.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis GN=rplI PE=3 SV=1 gi\|213649002 - gi\|213649002\|ref\|ZP_03379055.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALPA - 50S ribosomal protein L9 OS=Salmonella paratyphi A GN=rplI PE=3 SV=1 gi\|213864942 - gi\|213864942\|ref\|ZP_03387061.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|204323759, gi... - gi\|204927094\|ref\|ZP_03218296.1\| ribosomal protein L9 [Salmonella enterica subsp. enterica serovar Ja... gi\|213028577 - gi\|213028577\|ref\|ZP_03343024.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213161634 - gi\|213161634\|ref\|ZP_03347344.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213419167 - gi\|213419167\|ref\|ZP_03352233.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|194472793, gi... - gi\|194472793\|ref\|ZP_03078777.1\| ribosomal protein L9 [Salmonella enterica subsp. enterica serovar Ke... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis GN=rplI PE=3 SV=1 RL9_SALSV - 50S ribosomal protein L9 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplI PE=3 SV=1 RL9_SALA4 - 50S ribosomal protein L9 OS=Salmonella agona (strain SL483) GN=rplI PE=3 SV=1 RL9_SALPK - 50S ribosomal protein L9 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
RL9_VIBVY - 50S ribosomal protein L9 OS=Vibrio vulnificus (strain YJ016) GN=rplI PE=3 SV=1 RL9_VIBVU - 50S ribosomal protein L9 OS=Vibrio vulnificus (strain CMCP6) GN=rplI PE=3 SV=1 RL9_VIBVU - 50S ribosomal protein L9 OS=Vibrio vulnificus GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
gi\|77977619, gi\|... - gi\|77977619\|ref\|ZP_00833063.1\| COG0359: Ribosomal protein L9 [Yersinia intermedia ATCC 29909], gi\|23...	179.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVILLDKIG NLGSLGDTVN VKSGYARNFL IPQGKAVMAT KANVAMFESR RAELEAKVAE  60
   61 QLAAAQTRAD QVNALEAVVI ASKAGDEGKL FGSIGTRDIA DAITAAGVKV SKSEVRLPEG 120
  121 ALRNVGAYEV SVQLHSEVFA TAKVQVVAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1p85F
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.6660890573497	bayes_pls_golite062009
structural molecule activity	8.10075613300028	bayes_pls_golite062009
catalytic activity	0.295853503406924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: