YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114676756
Organism:	Pan troglodytes
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114676756.

Description	E-value	Query Range	Subject Range
gi\|109461675 - gi\|109461675\|ref\|XP_001079194.1\| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide...	9.0E-39	[1..85]	[1..85]
CX6B1_TARSY - Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3 SV=3	2.0E-36	[1..86]	[1..86]
gi\|30584127, gi\|... - gi\|61372211\|gb\|AAX43802.1\| cytochrome c oxidase subunit VIb [synthetic construct], gi\|30584127\|gb\|AA...	4.0E-36	[1..86]	[1..86]
CX6B1_MOUSE - Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1 SV=2 gi\|109467443, gi... - gi\|223718723\|ref\|NP_001138745.1\| cytochrome c oxidase, subunit VIb polypeptide 1 [Rattus norvegicus]...	5.0E-36	[1..86]	[1..86]
gi\|73948472 - gi\|73948472\|ref\|XP_855469.1\| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide 1 [...	7.0E-36	[1..86]	[1..86]
CX6B1_BOVIN - Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2	2.0E-35	[1..86]	[1..86]
gi\|41055614, gi\|... - gi\|41055614\|ref\|NP_956800.1\| hypothetical protein LOC393478 [Danio rerio], gi\|33416363\|gb\|AAH55540.1...	2.0E-35	[1..86]	[1..86]
CX6B1_PONPY - Cytochrome c oxidase subunit VIb isoform 1 - Pongo pygmaeus (Orangutan) CX6B1_PONAB - Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3	2.0E-35	[1..86]	[1..86]
gi\|33339250 - gi\|33339250\|gb\|AAQ14281.1\|AF255947_1 cytochrome c oxidase subunit VIb precursor [Scombridae gen. sp....	4.0E-35	[1..86]	[1..86]
gi\|227130 - gi\|227130\|prf\|\|1614425A chymodenin	5.0E-35	[2..86]	[1..85]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDMETKIK NYKTAPFDSR FPNQNQTRNC WQNYLDFHRC QKAMTAKGGD ISVCEWYQRV  60
   61 YQSLCPTSWV TDWDEQRAEG TFPGKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1occH
Description:	Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	8.77230386960109	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	8.77230386960109	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	8.77230386960109	bayes_pls_golite062009
heme-copper terminal oxidase activity	8.46183559370125	bayes_pls_golite062009
oxidoreductase activity	5.63278726556437	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.24364609265355	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.09509456823261	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.46771419705328	bayes_pls_golite062009
cation transmembrane transporter activity	2.2783820574886	bayes_pls_golite062009
catalytic activity	0.287695754348243	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: