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View Structure Prediction Details

Protein: gi|116310213
Organism: Oryza sativa Indica Group
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116310213.

Description E-value Query
Range
Subject
Range
RUS2_ARATH - Protein root UVB sensitive 2, chloroplastic OS=Arabidopsis thaliana GN=RUS2 PE=1 SV=2
483.0 [0..23] [429..26]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILERIRGG GDRAAVGEGP REPEPWVEIS ESISRLCSFD AGRVSVKVIQ DSRPIHDKMI  60
   61 DSFLNKFFPS GYPYSVNEGY LTYTKFRALQ HFSSAMLHVL STQSLLFAAG LRPTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQATAVSWIL KDGMQHAGKL ICSGMGARMD SEPKSWRILA DVLYDFGTAL EVISPLCPQL  60
   61 FLEVAGFGNF AKGMAVVAAR ATRLPIYSSF AKEGNLSDLF AKGEAISTLF NVMGIGAGIG 120
  121 LASTVCSTTQ GKLIAGPLLS VVHIYGVVQE MRATPVNTLN PQRTAMIVAD FIKSGKVSSP 180
  181 AELRYREDLL FPNRLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEAGSVKIGQ PVRRVLSPQR IEQLKATFSK EKFLLSRKDN SAYMVLEQSA TGEDALRGWL  60
   61 VAAFASEMER SGVGSGDTVL NVAYERMENV FPMFVAEVKS RGWYTDQFLD GNRSRIAYAN 120
  121 PISGSAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle