YRC Public Data Repository - Protein Structure Prediction

Protein:	CPLX1_RAT
Organism:	Rattus norvegicus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPLX1_RAT.

Description	E-value	Query Range	Subject Range
gi\|15928669, gi\|... - gi\|31542416\|ref\|NP_031782.2\| complexin 1 [Mus musculus], gi\|15928669\|gb\|AAH14803.1\| Complexin 1 [Mus...	160.0	[0..1]	[134..1]
gi\|30584359, gi\|... - gi\|61372290\|gb\|AAX43818.1\| complexin 1 [synthetic construct], gi\|61372285\|gb\|AAX43817.1\| complexin 1...	154.0	[0..1]	[134..1]
CPLX1 - complexin 1 gi\|60655261 - gi\|60655261\|gb\|AAX32194.1\| complexin 1 [synthetic construct]	153.0	[0..1]	[134..1]
gi\|108995263 - gi\|108995263\|ref\|XP_001094482.1\| PREDICTED: similar to complexin 1 isoform 3 [Macaca mulatta] CPLX1_MACFA - Complexin-1 OS=Macaca fascicularis GN=CPLX1 PE=2 SV=1	152.0	[0..1]	[134..1]
gi\|55926107, gi\|... - gi\|55926107\|ref\|NP_001007496.1\| cplx2 protein [Xenopus (Silurana) tropicalis], gi\|51258162\|gb\|AAH799...	152.0	[0..1]	[134..1]
CPLX1_BOVIN - Complexin-1 OS=Bos taurus GN=CPLX1 PE=2 SV=1	151.0	[0..1]	[134..1]
gi\|189527775, gi... - gi\|68373364\|ref\|XP_683429.1\| PREDICTED: similar to complexin 2 isoform 1 [Danio rerio], gi\|189527775...	151.0	[0..1]	[134..1]
gi\|37590711, gi\|... - gi\|37590711\|gb\|AAH59299.1\| MGC68923 protein [Xenopus laevis], gi\|162139014\|ref\|NP_001080000.1\| hypot...	150.0	[0..1]	[134..1]
gi\|50761882 - gi\|50761882\|ref\|XP_424869.1\| PREDICTED: similar to synaphin 2 [Gallus gallus]	149.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFVMKQALG GATKDMGKML GGDEEKDPDA AKKEEERQEA LRQAEEERKA KYAKMEAERE  60
   61 VMRQGIRDKY GIKKKEEREA EAQAAMEANS EGSLTRPKKA IPPGCGDEPE EEDESILDTV 120
  121 IKYLPGPLQD MFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	89.420216
Match:	PF05835.3
Description:	No description for PF05835.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits