| Protein: | gi|109482994, gi... |
| Organism: | Rattus norvegicus |
| Length: | 260 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109482994, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
154.0 | [0..1] | [258..1] |
|
|
153.0 | [0..1] | [258..1] |
|
|
152.0 | [0..1] | [258..1] |
|
|
149.0 | [0..1] | [259..1] |
|
|
137.0 | [0..1] | [241..1] |
|
|
136.0 | [0..1] | [241..1] |
|
|
135.0 | [0..4] | [251..1] |
|
Region A: Residues: [1-192] |
1 11 21 31 41 51
| | | | | |
1 MSATGPISNY YVDSLISHDN EDLLASRFPA TGAHPAAARP SGLVPDCSDF PSCSFAPKPA 60
61 VFSTSWAPVP SQSSVVYHPY GPQPHLGADT RYMRTWLEPL SGAVSFPSFP AGGRHYALKP 120
121 DAYPGRRADC GPGDGRSYPD YMYGSPGELR DRAPQTLPSP EADALAGSKH KEEKADLDPS 180
181 NPVANWIHAR ST
|
| Detection Method: |  |
| Confidence: | 107.119186 |
| Match: | PF04617.4 |
| Description: | No description for PF04617.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [193-260] |
1 11 21 31 41 51
| | | | | |
1 RKKRCPYTKY QTLELEKEFL FNMYLTRDRR YEVARVLNLT ERQVKIWFQN RRMKMKKMNK 60
61 EKTDKEQS
|
| Detection Method: | |
| Confidence: | 24.0 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
