Protein: | CSN4-PB, CSN4-PA |
Organism: | Drosophila melanogaster |
Length: | 407 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSN4-PB, CSN4-PA.
Description | E-value | Query Range |
Subject Range |
|
260.0 | [0..9] | [406..2] |
Region A: Residues: [1-137] |
1 11 21 31 41 51 | | | | | | 1 MAANYGISTA ALRSQLMGLI NFTGTHKDQA DKYRQLLKTV LTNTGQELID GLRLFVEAIV 60 61 NEHVSLVISR QILNDVGSEL SKLPDDLSKM LSHFTLEKVN PRVISFEEQV AGIRFHLANI 120 121 YERNQQWRDA ATVLVGI |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [138-279] |
1 11 21 31 41 51 | | | | | | 1 PLETGQKQYS VECKLGTYLK IARLYLEDND SVQAELFINR ASLLQAETNS EELQVLYKVC 60 61 YARVLDYRRK FIEAAQRYNE LSYRKIVDQG ERMTALKKAL ICTVLASAGQ QRSRMLATLF 120 121 KDERCQHLPA YGILEKMYLE RI |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [280-407] |
1 11 21 31 41 51 | | | | | | 1 IRRSELQEFE ALLQDHQKAA TSDGSSILDR AVFEHNLLSA SKLYNNITFE ELGALLDIPA 60 61 VKAEKIASQM ITEGRMNGHI DQISAIVHFE NRELLPQWDR QIQSLCYQVN SIIEKISVAE 120 121 PDWMDNLN |
Detection Method: | |
Confidence: | 11.0 |
Match: | 1ufmA |
Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.09178084244715 | bayes_pls_golite062009 |
DNA binding | 4.69269372393889 | bayes_pls_golite062009 |
nucleic acid binding | 4.59221092058767 | bayes_pls_golite062009 |
transcription factor activity | 4.01234546864709 | bayes_pls_golite062009 |
binding | 3.52874320222492 | bayes_pls_golite062009 |
transcription repressor activity | 3.28015281691988 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.23304004014963 | bayes_pls_golite062009 |
transcription activator activity | 2.21230033124772 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.40206639526766 | bayes_pls_golite062009 |
small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
transcription factor binding | 0.78051974537344 | bayes_pls_golite062009 |
acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
protein binding | 0.753698599635855 | bayes_pls_golite062009 |
specific transcriptional repressor activity | 0.59003343009795 | bayes_pls_golite062009 |
ligase activity, forming carbon-nitrogen bonds | 0.486434906547244 | bayes_pls_golite062009 |
hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |