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View Structure Prediction Details

Protein: FBpp0310200, CG1...
Organism: Drosophila melanogaster
Length: 1046 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310200, CG1....

Description E-value Query
Range
Subject
Range
gi|6634129 - gi|6634129|emb|CAB64389.1| TKR protein [Drosophila melanogaster]
576.0 [0..1] [993..1]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKDAHQKLI KHRQSTKLSM TDFACQAAPV KQPLPLELPL PLSVQLQLLA KTPTSDHAPM  60
   61 HSTPPTTPPT PPPLPLNMSQ SASAVTEAAT PENSLPATPP SEGALAVP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2cr2A
Description: Solution structure of N-terminal domain of speckle-type POZ protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [109-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPQDHYSLR WNNHQNHILR AFDALLKTKT LVDVTLVCAE TSIRAHKMVL SACSPFFQRV  60
   61 FAETPCKHPV IVLKDFRGWV VQAIVDFMYR GEISVPQQRL QTLIQAGESL QVRGLVESSV 120
  121 PEHTPTPAAS PDDFGMLDTS MLSSTFEDEC PTMVRPSKGG KLLMPSARLF GNASSAIAAL 180
  181 GLRRKREQES D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #3
Region A:
Residues: [300-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDLESDQELG GSSPMPRRKQ ARPRRRSGDV PHDFTLNKTD AESLQTVIKH ELLERAERDQ  60
   61 EEAPDQDNSQ GEAEKISSSP AKTLVERAKE QKSMKEEGSD QPRSLNEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [408-626]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHQLELDDED DDDQDHEEEE EQDIEELIHT TNELRRQAAA AAANAAAMSP NPSPCLSDGP  60
   61 EDLCTTKKGK ELISGPSSSA DCESNNNNSS KLQDNNQRIM LSLKDIRQLN ANPNPTAIHT 120
  121 PTSCSGGNNG LLTFPPPGLR PPGLPDSPPC HMEALEAQMH AAAAAAVAAA GSGEHPFHHM 180
  181 EHQMEMSLAA AAAAAAMHQR EPRDPRDGRD HNAFASNLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #5
Region A:
Residues: [627-771]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPMGMPPFGG HNGGHPGNSG PGNGCPGQAA HERLEESMNR LSKELGKEFG KEFGKEFGKE  60
   61 FGPASPMSLQ GPFNAPDGPP HPPSPLPFPG MSSAMTLTPP HMFGLDSPLG LFPPGIDPGK 120
  121 LYNPLMEMSD PRDMPGGPPP FLKKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [772-886]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPKGQHSA PRGGPPRSWT NTELTEALQH VWNKKMTTSQ ASRIFGIPYN SLLMYVRGKY  60
   61 GKSLKLEQLR KDCISGPPIE MLQMGIGGGS GGSTKNEKSK ERKEKEKDKN SMSSN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.23
Match: 2cobA
Description: Solution structures of the HTH domain of human LCoR protein
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [887-1046]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGGSANSQG GAPTSGSGPM QHSGELGPMG QLDLDLGLPL GPPGGPRSNS SEPDLLSAPN  60
   61 ALFNPFNPQG FYPDFSGGFP GLPLSMLNLL PPAERHHAAA AMHHLGVSMD EDCKSVGSKQ 120
  121 SSSVDEDYSG PGIPLSLEHR REISATGPPL TPSNGGTGHD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle