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Protein Overview: FBpp0310200, CG1...

General Information:
Name(s) found: FBpp0310200 [FlyBase]
CG16778-PD / FBpp0099472 [FlyBase]
CG16778-PC / FBpp0072360 [FlyBase]
CG16778-PB / FBpp0072359 [FlyBase]
Description(s) found:
Found 62 descriptions.
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  • type=protein; loc=2R:complement(20974431..20975257,20979115..20979246,20981805..20983986); ID=FBpp0310200; name=lov-PF; parent=FBgn0266129,FBtr0343605; dbxref=FlyBase:FBpp0310200,FlyBase_Annotation_IDs:CG16778-PF; MD5=9be7a23f00cf5ec2f9b350731c6261f1; length=1046; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG16778 (CG16778, FBgn0003715). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20973303..21027064. It has the cytological map location 60F3-60F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: gravitaxis. 9 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG16778 (CG16778, FBgn0003715). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20973303..21027064. It has the cytological map location 60F3-60F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: gravitaxis. 9 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG16778 (CG16778, FBgn0003715). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:20973303..21027064. It has the cytological map location 60F3-60F5. Based on sequence similarity, it is predicted to have molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: gravitaxis. 9 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1046 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gravitaxis [IMP]
    Molecular Function: DNA binding [ISS][NAS]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKDAHQKLI KHRQSTKLSM TDFACQAAPV KQPLPLELPL PLSVQLQLLA KTPTSDHAPM  60
   61 HSTPPTTPPT PPPLPLNMSQ SASAVTEAAT PENSLPATPP SEGALAVPSA PQDHYSLRWN 120
  121 NHQNHILRAF DALLKTKTLV DVTLVCAETS IRAHKMVLSA CSPFFQRVFA ETPCKHPVIV 180
  181 LKDFRGWVVQ AIVDFMYRGE ISVPQQRLQT LIQAGESLQV RGLVESSVPE HTPTPAASPD 240
  241 DFGMLDTSML SSTFEDECPT MVRPSKGGKL LMPSARLFGN ASSAIAALGL RRKREQESDR 300
  301 DLESDQELGG SSPMPRRKQA RPRRRSGDVP HDFTLNKTDA ESLQTVIKHE LLERAERDQE 360
  361 EAPDQDNSQG EAEKISSSPA KTLVERAKEQ KSMKEEGSDQ PRSLNENHHQ LELDDEDDDD 420
  421 QDHEEEEEQD IEELIHTTNE LRRQAAAAAA NAAAMSPNPS PCLSDGPEDL CTTKKGKELI 480
  481 SGPSSSADCE SNNNNSSKLQ DNNQRIMLSL KDIRQLNANP NPTAIHTPTS CSGGNNGLLT 540
  541 FPPPGLRPPG LPDSPPCHME ALEAQMHAAA AAAVAAAGSG EHPFHHMEHQ MEMSLAAAAA 600
  601 AAAMHQREPR DPRDGRDHNA FASNLLGPMG MPPFGGHNGG HPGNSGPGNG CPGQAAHERL 660
  661 EESMNRLSKE LGKEFGKEFG KEFGKEFGPA SPMSLQGPFN APDGPPHPPS PLPFPGMSSA 720
  721 MTLTPPHMFG LDSPLGLFPP GIDPGKLYNP LMEMSDPRDM PGGPPPFLKK KMPRPKGQHS 780
  781 APRGGPPRSW TNTELTEALQ HVWNKKMTTS QASRIFGIPY NSLLMYVRGK YGKSLKLEQL 840
  841 RKDCISGPPI EMLQMGIGGG SGGSTKNEKS KERKEKEKDK NSMSSNGSGG SANSQGGAPT 900
  901 SGSGPMQHSG ELGPMGQLDL DLGLPLGPPG GPRSNSSEPD LLSAPNALFN PFNPQGFYPD 960
  961 FSGGFPGLPL SMLNLLPPAE RHHAAAAMHH LGVSMDEDCK SVGSKQSSSV DEDYSGPGIP1020
 1021 LSLEHRREIS ATGPPLTPSN GGTGHD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 11.0 Solution structure of N-terminal domain of speckle-type POZ protein
    2 View Details [109..299] PSI-BLAST 32.522879 No description for 2nn2A was found.
    3 View Details [300..407] deduced N/A No confident structure predictions are available.
    4 View Details [408..626] PSI-BLAST 7.522879 No description for 2i13A was found.
    5 View Details [627..771] MSA 4.227997 View MSA. No confident structure predictions are available.
    6 View Details [772..886] FFAS03 2.23 Solution structures of the HTH domain of human LCoR protein
    7 View Details [887..1046] MSA 1.017984 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle