| Protein: | sle-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1420 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sle-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
281.0 | [0..2] | [1400..219] |
|
Region A: Residues: [1-294] |
1 11 21 31 41 51
| | | | | |
1 MVVTRARTRR LSLLETDSRP STPQLDTVAE LGTASPRATR RTRLNSSTLD VRTPTRTRRA 60
61 SLARGETPEP TTPSSVKRTA RTPAKNTRSV RQQLTLTEEP EENEVKQEKP SPSPSPVPKE 120
121 GKGKAQRKPS VSPSPGRTLT PNQQSDEKRV TRSMSQTPPM PTRSSSNTPR DLNDSPKVEQ 180
181 KAKPNIKTTP KVAVRLEKLS MDKFSGKKME KAKPLIVPDE LKDNGVVEEQ NKSITEAHSQ 240
241 APETHESAQP DKDAGKQSFL KSFTTLSKIQ GSSKALHPDE SADTITKITP TSTS
|
| Detection Method: |  |
| Confidence: | 1.12 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [295-486] |
1 11 21 31 41 51
| | | | | |
1 KKIEENMDDV FETLRVESPK VERKIETLQK VHTVGTPEIK EKDEPVGVDN EIKTKTETPQ 60
61 KIEPPIIESK VETQQLIDHP QIEKKRDTPQ NVSTVDLMDT SPEKDESMED QEFLDAEDSI 120
121 VQLEPQTDEP VEKPKELEFV DLDDDEPVFP SEAPKYVEDS KEVHPDDSMD DDKQNKIDVT 180
181 EVIHLPSIRA RA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [487-593] |
1 11 21 31 41 51
| | | | | |
1 VRSPAVEQKK SVDFNNDTDD LEVEKKRFPK TPGREKVPVC RILTPKPETP LKLALQKGRN 60
61 SSTPILKDQE RGLSNSTEEL HPAPPQIDAI KPFDELESKN AKDEMVE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [594-1065] |
1 11 21 31 41 51
| | | | | |
1 QSPMSKQKAE NKILARLESF EEDVEDHGNE EENEEEHEED KSISEFVDLE AEDAGKDYMS 60
61 GDSMDSSLRR EMEENEIPID GESVGSKDTE ESTPEESDGD DSFIVSDNED EEDLGQLCYS 120
121 SGEDEIEDAE ESEQAERSSV KRRRIIIASP SDEEHDGKVQ SNDDSSENKT EKPKNQSNCS 180
181 SNASKLSEAA QLLNVSEEKS SISETELERS RQVALNELNK SERFNKTETQ LDISVMEVDS 240
241 SDHDEEEKTE KVGAKNNRSL YEIVDSDDGE EQDQDQSDAD KPAESENHSE IKKSTSFMDQ 300
301 MSGAKGNKSV YEIMDSYETE DPKEAGKNEE SDKDKPAENG KSDKDKQAET EMSDEDKPSE 360
361 IKSPSTIKKS IISTADEEAL LAELASSDLS HLEKMFNPLQ KSRRQSLHVP SPELAAKNPK 420
421 LRRRSERVEV GNDFCPSQSF VDMVAEKKRQ KNKRKRLSKS LSGAPEDLEE ME
|
| Detection Method: | |
| Confidence: | 1.71 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1066-1229] |
1 11 21 31 41 51
| | | | | |
1 IKHERKRLKS SHGASTDSME EDNENETMTV AEEHHSDGEV SNGEVPIEEK PTTSSEKPSA 60
61 SELPEEEETV AVEELLMEKP KTCDSPRSEE RPTEIVTSKP KGMAPVKVEK TAEYYLAYCH 120
121 NLLEAANEAK LKEKKEHLAS GAKQKKPKRI AAQAPSKLLG TIGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1230-1420] |
1 11 21 31 41 51
| | | | | |
1 ESETNTAKSS KQPPALKKDV KRLQAARQAV SHAVNLLAPP KATEAEPRTL SRKLSPQPPV 60
61 VDKKSAKQKK GKKKQKPQEA SPLKSSDEEN HGHRIRTNAG YVTVVDEPPT KVPKIELIKT 120
121 SSGMVRVEPC TPKQKYFREL PPTPKMHGFR EEPGPSGMSR KRAKHAAPKV EHNSAKQAAL 180
181 RFKEQIFARR S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
