| Protein: | loco-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1175 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for loco-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1080.0 | [0..1] | [1175..1] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MNNTNTTRGT CSRIPIASKQ EPTIASMVER FVQSLSQLND SGTFDSSFEI KRIHPGSSAG 60
61 STPKHVRHRC LTELDREQLT RFVQDFEERQ ASTPKVKSKI SSPYICRKAK EFYQSASGRR 120
121 SASPQITIAP ETVQEEKVLV NPLPRKCAEA EDLMPPPMAM ARVQAERRSC RSASRVLQFF 180
181 SSATKRRSGN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [191-396] |
1 11 21 31 41 51
| | | | | |
1 RKLSEPEMED NRADSPVLIR VTRDRVEEQL GCSPLAASGG EVPTSSEDEE EHDDGISSAS 60
61 SNLTSQSGSS NSRNLSPDSS FEMHAPLLPS FKVTPPRAVC RVGKNAACEF ARFLRGSFHS 120
121 KRASVTTLRR SLSDPDAVQQ MDFSKPPPLR DTTNVMRNRA LPANASPFRR AWGQSSFRTP 180
181 RSDKVAKEQQ QLGQSSPVRR TASMNA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [397-600] |
1 11 21 31 41 51
| | | | | |
1 SDNDMYIKTL MLDSDLKSSR SQHQLSLLQV PKVLTTPAPP SAITASVAAE GAAQDHGCPS 60
61 SWAGSFERML QDAAGMQTFS EFLKKEFSAE NIYFWTACER YRLLESEADR VAQAREIFAK 120
121 HLANNSSDPV NVDSQARSLT EEKLADAAPD IFAPAQKQIF SLMKFDSYQR FIRSDLYKSC 180
181 VEAEQKNQPL PYSGLDLDEL LKTN
|
| Detection Method: | |
| Confidence: | 56.69897 |
| Match: | 1agrE |
| Description: | Regulator of G-protein signalling 4, RGS4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| GTPase regulator activity | 1.92987277493861 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.90800479999702 | bayes_pls_golite062009 |
| GTPase activator activity | 1.87534424848905 | bayes_pls_golite062009 |
| binding | 1.71250041369331 | bayes_pls_golite062009 |
| enzyme activator activity | 1.62073651679221 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.49796137854909 | bayes_pls_golite062009 |
| protein binding | 1.34804002381061 | bayes_pls_golite062009 |
| signal transducer activity | 1.14361809679544 | bayes_pls_golite062009 |
| molecular transducer activity | 1.14361809679544 | bayes_pls_golite062009 |
| beta-catenin binding | 0.59248827140739 | bayes_pls_golite062009 |
|
Region A: Residues: [601-690] |
1 11 21 31 41 51
| | | | | |
1 FHLGAFSKLK KSASNAEDRR RKSLLPWHRK TRSKSRDRTE IMADMQHALM PAPPVPQNAP 60
61 LTSASLKLVC GQNSLSDLHS SRSSLSSFDA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [691-779] |
1 11 21 31 41 51
| | | | | |
1 GTATGGQGAS TESVYSLCRV ILTDGATTIV QTRPGETVGE LVERLLEKRN LVYPYYDIVF 60
61 QGSTKSIDVQ QPSQILAGKE VVIERRVAF
|
| Detection Method: | |
| Confidence: | 3.7 |
| Match: | 1rrbA |
| Description: | THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 3.28306198153429 | bayes_pls_golite062009 |
| binding | 2.0688320293797 | bayes_pls_golite062009 |
| protein binding | 1.72968950672856 | bayes_pls_golite062009 |
| signal transducer activity | 1.07208466109379 | bayes_pls_golite062009 |
| molecular transducer activity | 1.07208466109379 | bayes_pls_golite062009 |
| receptor binding | 0.286966350616338 | bayes_pls_golite062009 |
|
Region A: Residues: [780-881] |
1 11 21 31 41 51
| | | | | |
1 KLDLPDPKVI SVKSKPKKQL HEVIRPILSK YNYKMEQVQV IMRDTQVPID LNQPVTMADG 60
61 QRLRIVMVNS DFQVGGGSSM PPKQSKPMKP LPQGHLDELT NK
|
| Detection Method: | |
| Confidence: | 16.69897 |
| Match: | 1wfyA |
| Description: | Solution structure of the Ras-binding domain of mouse RGS14 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 3.3713276381973 | bayes_pls_golite062009 |
| binding | 2.14676646738549 | bayes_pls_golite062009 |
| protein binding | 1.86841453215444 | bayes_pls_golite062009 |
| signal transducer activity | 1.05682194741929 | bayes_pls_golite062009 |
| molecular transducer activity | 1.05682194741929 | bayes_pls_golite062009 |
| receptor binding | 0.298046142314417 | bayes_pls_golite062009 |
|
Region A: Residues: [882-1082] |
1 11 21 31 41 51
| | | | | |
1 VFNELLASKA DAAASEKSRP VDLCSMKSNE APSETSSLFE RMRRQQRDGG NIPASKLPKL 60
61 KKKSTSSSQQ SEEAATTQAV ADPKKPIIAK LKAGVKLQVT ERVAEHQDEL LEGLKRAQLA 120
121 RLEDQRGTEI NFDLPDFLKN KENLSAAVSK LRKVRASLSP VSKVPATPTE IPQPAPRLSI 180
181 TRSQQPVSPM KVDQEPETDL P
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1083-1175] |
1 11 21 31 41 51
| | | | | |
1 AATQDQTEFA KAPPPLPPKP KVLPIKPSNW GVAQPTGNYC NKYSPSKQVP TSPKEASKPG 60
61 TFASKIPLDL GRKSLEEAGS RCAYLDEPSS SFV
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
