| Protein: | sak1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 766 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sak1.
| Description | E-value | Query Range |
Subject Range |
|
|
659.0 | [0..1] | [727..1] |
|
|
491.0 | [0..4] | [754..43] |
|
|
489.0 | [0..16] | [754..171] |
|
|
489.0 | [0..16] | [754..191] |
|
|
456.0 | [0..333] | [766..126] |
|
|
452.0 | [0..6] | [754..116] |
|
|
445.0 | [0..333] | [766..276] |
|
|
442.0 | [0..333] | [766..301] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MNPSDLPGQI PLSRSDMNVQ DQLDPVQRFD THFMLPQEEN FLNRPSITSE SAHPRGSDLE 60
61 QETELKRLAL EHEHYSLESL AEKL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [85-176] |
1 11 21 31 41 51
| | | | | |
1 RMDHVSANSE KFRQVFGICW LKRACEEQQD AAVQRNQIYA HYVEICNSLH IKPLNSASFG 60
61 KLVRLLFPSI KTRRLGMRGH SKYHYCGIKL RG
|
| Detection Method: | |
| Confidence: | 26.221849 |
| Match: | 1dp7P |
| Description: | Class II MHC transcription factor RFX1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 4.84466441605416 | bayes_pls_golite062009 |
| nucleic acid binding | 4.57954522145536 | bayes_pls_golite062009 |
| transcription factor activity | 4.12685284895733 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.3918869755162 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.181186586600235 | bayes_pls_golite062009 |
| structural molecule activity | 0.111941063082739 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0360186926687502 | bayes_pls_golite062009 |
|
Region A: Residues: [177-383] |
1 11 21 31 41 51
| | | | | |
1 QDSFRRLRTF SDSSLSPVSC SSFPKPIPNH FENDVSSIQN TNQRVESSPA SVNAAAIVRK 60
61 SAVTPSSDPY NSPPPSIPLL GSQTNLQLAP SFAAPQAHPL PSHLSQSNVP PQLSHSSVPS 120
121 PAPPRSVSQP TYFSQPMPQF SSSFVPGTSS IVPTLHPASA QEDFNLQHSL FFKLKLKFLP 180
181 PHKLPWIPSL DVSSFSLPPI DYYLNGP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [384-627] |
1 11 21 31 41 51
| | | | | |
1 YDNVEAKSAL MNIYSSHCIT LIESVRYMHL KQFLSEISNF PNSLSPSLLA LLSSPYFTKW 60
61 IERSDTVMYR EILKLLFPMT LQVVPPPVLV LLRHLAENLV NHISSIYASH SSCLLQVKSE 120
121 TAAIFSNLLS RLLRVNDTAH AAARFLANPA DRHLICNDWE RFVSTRFIVH RELMCNDKEA 180
181 VAALDEWYSI LSTCSNPSEL LDPLKDKHEA SDTSMNRVEL RQIDGVLDRM ADFFLELPSR 240
241 FPSC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [628-766] |
1 11 21 31 41 51
| | | | | |
1 SPRMFLLCLG ALQTSVLREI TVSGGEAFGA LWVIRCWVDE YMTWVAEIGG YLDDSYDELE 60
61 QHHANFHNKA GISQSNIPPH LQEHRQSQQH FQQDIEALQS QQQQQATKNS LMEAAYQNAQ 120
121 KQKEDDYISI VFDTNGACS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
