| Protein: | ubp12 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 979 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp12.
| Description | E-value | Query Range |
Subject Range |
|
|
564.0 | [0..43] | [978..3] |
|
|
563.0 | [0..43] | [978..3] |
|
|
563.0 | [0..43] | [978..3] |
|
|
562.0 | [0..43] | [978..3] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MDSLSESSTS SYHGKRPRSL SEESQSSSNM DDISQKSISL GDASEISKNL PSIAEQKQLI 60
61 GELVNNQPEL ELGQVDNYIL SYSWYERLCS YLAEDGPFPG PVDQEDIADL ETGTLKPDLQ 120
121 EEIDFTIISR DVWDLLVRWY GLKGPEFPRE TVNLGSE
|
| Detection Method: |  |
| Confidence: | 28.39794 |
| Match: | 1w6vA |
| Description: | Solution structure of the DUSP domain of hUSP15 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein-specific protease activity | 6.17519305564032 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 6.1483519675549 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 5.52349554716375 | bayes_pls_golite062009 |
| binding | 2.43973746940455 | bayes_pls_golite062009 |
| peptidase activity | 2.16260367986128 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 1.99772512443601 | bayes_pls_golite062009 |
| protein binding | 1.98124019646987 | bayes_pls_golite062009 |
| endopeptidase activity | 1.65083162170561 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.33423779714503 | bayes_pls_golite062009 |
| hydrolase activity | 1.28832055307406 | bayes_pls_golite062009 |
| catalytic activity | 0.639120026974844 | bayes_pls_golite062009 |
|
Region A: Residues: [158-284] |
1 11 21 31 41 51
| | | | | |
1 SHPHLVVEVY PPIFSLTLLS TNAVDANESH KPKKISLSSK STLEDLLEGV KYTLSLPSDQ 60
61 FRLWRVDTDQ PLHRTIDPSS FIKINSKEII DFLEKSKTLV ELGMDSSCSL VAECMINETW 120
121 PVDRALR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [285-630] |
1 11 21 31 41 51
| | | | | |
1 LQFLIQQRNN QSSNEEQKQE KRVPGTCGLS NLGNTCYMNS ALQCLTHTRE LRDFFTSDEW 60
61 KNQVNESNPL GMGGQVASIF ASLIKSLYSP EHSSFAPRQF KATIGKFNHS FLGYGQQDSQ 120
121 EFLAFLLDGL HEDLNRIYQK PYTSKPDLYE VDEEKIKNTA EECWRLHKLR NDSLIVDLFQ 180
181 GMYRSTLVCP VCNTVSITFD PFMDLTLPLP VKQVWSHTVT FIPADTNLTP LAIEVVLESK 240
241 AATIEDLVKY VAEKSGCSDY RKILVTETYK GRFYRFLTQL SKSLLMEISE EDEIYLYELE 300
301 RPYEDGSDDI LVPVYHISDD STNSANSYMS SRDFGHPFVL QLSDNE
|
| Detection Method: | |
| Confidence: | 61.221849 |
| Match: | 2gfoA |
| Description: | No description for 2gfoA was found. |
|
Region A: Residues: [631-979] |
1 11 21 31 41 51
| | | | | |
1 VTDASFISEK LKLKYQQFTT LKNLKNIDSL ESLELGHEDE QVQKGPLDVD MDHSQTPLFE 60
61 MRVFHDRFEK IPTGWNMSVS NLPLLTERDK KDLESTVDPL DAHSIEEEDD SEFKDVAPGS 120
121 YPEPSKSNEN TKLTAKENDR LLIQGDLLVC EWPEKSYQFV FSVAPSSPQM GRSLWLESKT 180
181 ILSDKKDDSE DSRTITLNDC LDEFEKTEQL GEEDPWYCPT CKEFRQASKQ MEIWRCPEIL 240
241 IFHLKRFSSE RRFRDKIDDL VEFPIDNLDM SMRTGSYKLS EKENPKLIYE LYAVDNHYGG 300
301 LGGGHYTAFA KNPDNGQFYC FDDSRVTPVC PEETVTSAAY LLFYRRKTS
|
| Detection Method: | |
| Confidence: | 36.09691 |
| Match: | 1nb8A |
| Description: | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cysteine-type peptidase activity | 6.54685807643041 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 6.39247995905454 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 5.91394445088241 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 4.1832081096766 | bayes_pls_golite062009 |
| peptidase activity | 3.28868056127375 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.01472402774099 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 2.96735553959103 | bayes_pls_golite062009 |
| SUMO-specific protease activity | 2.65263825059319 | bayes_pls_golite062009 |
| hydrolase activity | 2.29464693834116 | bayes_pls_golite062009 |
| endopeptidase activity | 2.26699762664334 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.3276268995308 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 1.01104209091599 | bayes_pls_golite062009 |
| NEDD8-specific protease activity | 0.687958315289315 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| nucleic acid binding | 0.439226369799415 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| DNA binding | 0.168761518285256 | bayes_pls_golite062009 |
| transferase activity | 0.0852393573521809 | bayes_pls_golite062009 |
