YRC Public Data Repository - Protein Structure Prediction

Protein:	nap1
Organism:	Schizosaccharomyces pombe
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nap1.

Description	E-value	Query Range	Subject Range
gi\|46126179, gi\|... - gi\|46126179\|ref\|XP_387643.1\| hypothetical protein FG07467.1 [Gibberella zeae PH-1], gi\|42554641\|gb\|E...	348.0	[0..1]	[392..1]
gi\|26354943 - gi\|26354943\|dbj\|BAC41098.1\| unnamed protein product [Mus musculus]	339.0	[0..1]	[381..1]
gi\|66851713, gi\|... - gi\|70998710\|ref\|XP_754077.1\| nucleosome assembly protein Nap1 [Aspergillus fumigatus Af293], gi\|6685... gi\|159126189 - gi\|159126189\|gb\|EDP51305.1\| nucleosome assembly protein Nap1, putative [Aspergillus fumigatus A1163]	329.0	[0..1]	[345..1]
gi\|116199267, gi... - gi\|88179068\|gb\|EAQ86536.1\| hypothetical protein CHGG_07789 [Chaetomium globosum CBS 148.51], gi\|1161...	327.0	[0..1]	[392..1]
gi\|164429322, gi... - gi\|164429322\|ref\|XP_955998.2\| nucleosome assembly protein [Neurospora crassa OR74A], gi\|157073435\|gb... gi\|28950350 - gi\|28950350\|emb\|CAD70974.1\| probable nucleosome assembly protein I [Neurospora crassa]	326.0	[0..1]	[392..1]
NP1L4_RAT - Nucleosome assembly protein 1-like 4 OS=Rattus norvegicus GN=Nap1l4 PE=1 SV=1	325.0	[0..1]	[393..1]
gi\|85077257 - gi\|85077257\|ref\|XP_955998.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917037, gi\|... - gi\|32414795\|ref\|XP_327877.1\| hypothetical protein [Neurospora crassa], gi\|28917037\|gb\|EAA26762.1\| hy...	323.0	[0..1]	[392..1]
gi\|111062491 - gi\|111062491\|gb\|EAT83611.1\| hypothetical protein SNOG_09419 [Phaeosphaeria nodorum SN15]	322.0	[0..1]	[392..1]
gi\|73983543 - gi\|73983543\|ref\|XP_540791.2\| PREDICTED: similar to nucleosome assembly protein 1-like 4 (predicted) ...	321.0	[0..1]	[393..1]
gi\|115438560, gi... - gi\|115438560\|ref\|XP_001218097.1\| hypothetical protein ATEG_09475 [Aspergillus terreus NIH2624], gi\|1...	321.0	[0..1]	[345..1]

Back

Predicted Domain #1

Region A:
Residues: [1-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENVNINNK RAGKMSAAPT PHNTPSGTSA PNFGAKAPQV NTIDEGDENL EAIDGKLGSL  60
   61 LHLTSEGVSE LPEAVQRRIS GLRGLQKRYS DLESQFQKEL FELEKAYAKK YAPIFKRRSE 120
  121 VVRGADEPTE EEIKKGEAAD ENEKKEPTSS ESKKQEGGDD TKGIPEFWLT AMKNVLSLSE 180
  181 MITPEDEGAL SHLVDIRISY MEKPGFKLEF EFAENPFFTN KILTKTYYYM EESGPSNVFL 240
  241 YDHAEGDKVD WKENADLTVR TVTKKQRNKN TKQTRVVKVS VPRDSFFNFF NPPTPPSEED 300
  301 EESESPELDE LLELDYQIGE DFKEKLIPRA VEWFTGEALA LENYDGFSDL DVEEDEDDVE 360
  361 SSSNEEVSDS DEEDSDSKHT AHGQQNAAEC RQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	2ayuA
Description:	The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
histone binding	4.83364158381373	bayes_pls_golite062009
binding	2.67502047678266	bayes_pls_golite062009
DNA binding	1.77868687163103	bayes_pls_golite062009
nucleic acid binding	1.77336286476068	bayes_pls_golite062009
protein binding	1.58681138679309	bayes_pls_golite062009
sequence-specific DNA binding	0.0196905966923535	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: