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Protein Overview: nap1

General Information:
Name(s) found: nap1 / SPCC364.06 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • nucleosome assembly protein Nap1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 393 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: protein import into nucleus [ISS]
    transcription from RNA polymerase II promoter [NAS]
    traversing start control point of mitotic cell cycle [IGILink to PubMed article][IMPLink to PubMed article]
    DNA replication-independent nucleosome assembly [IDALink to PubMed article]
    nucleosome disassembly [ISS]
    nucleosome assembly [ISSLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    histone binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENVNINNK RAGKMSAAPT PHNTPSGTSA PNFGAKAPQV NTIDEGDENL EAIDGKLGSL  60
   61 LHLTSEGVSE LPEAVQRRIS GLRGLQKRYS DLESQFQKEL FELEKAYAKK YAPIFKRRSE 120
  121 VVRGADEPTE EEIKKGEAAD ENEKKEPTSS ESKKQEGGDD TKGIPEFWLT AMKNVLSLSE 180
  181 MITPEDEGAL SHLVDIRISY MEKPGFKLEF EFAENPFFTN KILTKTYYYM EESGPSNVFL 240
  241 YDHAEGDKVD WKENADLTVR TVTKKQRNKN TKQTRVVKVS VPRDSFFNFF NPPTPPSEED 300
  301 EESESPELDE LLELDYQIGE DFKEKLIPRA VEWFTGEALA LENYDGFSDL DVEEDEDDVE 360
  361 SSSNEEVSDS DEEDSDSKHT AHGQQNAAEC RQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered Lid1-TAP APC complex on iontrap. Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..393] PSI-BLAST 74.69897 The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone binding
    		•  4.83364158381373 bayes_pls_golite062009
  • binding
    		•  2.67502047678266 bayes_pls_golite062009
  • DNA binding
    		•  1.77868687163103 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.77336286476068 bayes_pls_golite062009
  • protein binding
    		•  1.58681138679309 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0196905966923535 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle