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View Structure Prediction Details

Protein: SPAC6C3.09
Organism: Schizosaccharomyces pombe
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6C3.09.

Description E-value Query
Range
Subject
Range
gi|114605310 - gi|114605310|ref|XP_527222.2| PREDICTED: ribonuclease P 40kDa subunit isoform 3 [Pan troglodytes]
408.0 [0..14] [320..24]
gi|55743132 - ref|NP_006629.2| ribonuclease P 40kDa subunit [Homo sapiens]
RPP40 - ribonuclease P/MRP 40kDa subunit
405.0 [0..16] [320..26]
gi|109069502 - gi|109069502|ref|XP_001095772.1| PREDICTED: similar to ribonuclease P 40kDa subunit isoform 3 [Macac...
399.0 [0..16] [320..26]
gi|74004013 - gi|74004013|ref|XP_535875.2| PREDICTED: similar to ribonuclease P 40kDa subunit [Canis familiaris]
382.0 [0..14] [320..24]
RPP40_RAT - Ribonuclease P protein subunit p40 OS=Rattus norvegicus GN=Rpp40 PE=2 SV=1
367.0 [0..53] [320..1]
RPP40_MOUSE - Ribonuclease P protein subunit p40 OS=Mus musculus GN=Rpp40 PE=2 SV=1
364.0 [0..53] [320..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCAFTKELK DEIYQKNYTE HEILQNAYNG KLDILLPVED ASEEAIRSIT KIVQDLSFYE  60
   61 FSGSPALLLH PDLYSTFIHT GIATIVSSSD NDNKICISQG ILSVTLDKDS YLVSGIDAKP 120
  121 SSSEPKDTLW VANIDLKSAF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRPQWKGFER LKAALGRLPG KWSFYLTFPT EKVDQSYQNN LSHSLPVPMI SREINLKKGK  60
   61 LDQAKIPPPL VSTLNRNELF PSNGPLEVLE ILSFLRCNAK CVQNSFVPDP YISRYKPSCA 120
  121 VTDVLYLSIK GLFSSSTCLE LYELIRNISW NFIGVESFNS FRDVDNSSQL HSGDSSLLSF 180
  181 YDSRTERIRW TWRLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle