| Protein: | SPBC16G5.17 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 560 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.17.
| Description | E-value | Query Range |
Subject Range |
|
|
356.0 | [0..1] | [559..1] |
|
|
206.0 | [0..21] | [540..6] |
|
|
199.0 | [0..16] | [509..37] |
|
|
197.0 | [0..4] | [552..21] |
|
|
174.0 | [0..152] | [509..305] |
|
|
171.0 | [0..95] | [510..206] |
|
|
169.0 | [0..4] | [476..5] |
|
|
169.0 | [0..9] | [477..35] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MVGKSKNRAH KNIRARSCLR CRRRKVKCDR QYPCSRCKES EESCTYGVNE QAVQLLEEPL 60
61 SRPITRETDS SAHQETRTRL EENNLPKTQK FGFVDWKTIL KSSAEFQGIV QRDPESRLRE 120
121 ALET
|
| Detection Method: |  |
| Confidence: | 2.48 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [125-201] |
1 11 21 31 41 51
| | | | | |
1 DPKLKKRLEC ILETIPPWDV CESLLKVYAN TFNVTNYILD FEQADKLLSD LKNSNHVFAT 60
61 SIILIVTAIA VALSLES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [202-375] |
1 11 21 31 41 51
| | | | | |
1 FPSNIERYFS AVNHSAIELS DALNSKIDDF LNEEVIFRLW RNIDRIRLHA IRAQLCMRNQ 60
61 FRSMNTDLCY AIHYACFVNP IFQNTDTEYE ANMEVWLSIC EIDALECVLR SCQPWVQHDI 120
121 YGKLLSQRKM GSDVISYEFH SLLGQLLTCG LEIYKAIHTS TVNEFVNSIQ FYES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [376-560] |
1 11 21 31 41 51
| | | | | |
1 QLSLVLMEIE SKFSNIDGSD IHFRYLFLKT VFWTVRKNLY QGFITVSRTL VPNYPDIVQK 60
61 LGQTSIQLSR LISNSMDCFE KYGWLKAMLI LVTHTFLIIH VCSERGYDVP KDFWNVTASV 120
121 QATLEEKKYP GIVWERIHYV LNIYTTINSV EPELSEDHGD LDDQNLFQVF TDIFDFNFNF 180
181 PLPNL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
