YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC550.11
Organism:	Schizosaccharomyces pombe
Length:	1029 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC550.11.

Description	E-value	Query Range	Subject Range
gi\|31581595, gi\|... - ref\|NP_852658.1\| importin 7 [Mus musculus], gi\|11342591\|emb\|CAC17143.1\| RanBP7/importin 7 [Mus musc...	617.0	[0..2]	[1028..5]
IPO7 - importin 7 gi\|73988461 - gi\|73988461\|ref\|XP_542501.2\| PREDICTED: similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7...	613.0	[0..2]	[1028..5]
gi\|34858944, gi\|... - gi\|34858944\|ref\|XP_219265.2\| PREDICTED: similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7...	613.0	[0..2]	[1028..5]
gi\|114636081 - gi\|114636081\|ref\|XP_001169290.1\| PREDICTED: importin 7 isoform 2 [Pan troglodytes]	611.0	[0..2]	[1028..5]
gi\|28302264 - gi\|28302264\|gb\|AAH46568.1\| MGC52556 protein [Xenopus laevis]	603.0	[0..3]	[1028..6]
gi\|47087651, gi\|... - gi\|47087651\|ref\|NP_957199.2\| importin 7 [Danio rerio], gi\|42542622\|gb\|AAH66524.1\| Importin 7 [Danio ...	587.0	[0..2]	[1028..5]

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Predicted Domain #1

Region A:
Residues: [1-908]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVEHFDAT LSADPNTRTK AELSLKQLEK EPSFVLAVLQ LLSSQEISLP TQQAAVIYLK  60
   61 NRVSRSWSSI DDAPSPLDIP EEQKALFRQN ILPVLLQSPM STRSHLMAIL NIILSTDFPE 120
  121 YWPGFSEYTS NLVHSTERCE VYAGLICFHE LAKVYRWRLD DRQRDIGPLV AALFPTILQL 180
  181 GQGLINLEDN DSAEMLRLIL KTFKSVIALE LPPELLANDM ILSWIQLLLA VVQKPLPESL 240
  241 MSLEPEVRQS HVWHKCKKWA YYSLNRIFTR YGEPSSLVGD SANKYRAFAK NFITNVVPNI 300
  301 LETYIQQTIL WTQGQLWLSP RVLYFLGCFY EECVKPKSTW ALLKPHLQLL IGSFVFPQLC 360
  361 MSEEDEELWE LDPVEFIHKY IDIYDDFNSA DVAASRFLVK LASKRKKYTF MGILSFASDI 420
  421 LNQYAASPPN EKNPRQKEGA LRMVAAVSNS ILSKNSPVAG MMQDFLVAHV MPEFTSPVGY 480
  481 LRSRACEMIN RFSEIDWSDK SQLLNAYQAV LNCLQDNDLP VRIQAALALQ PLMRHLEVHD 540
  541 VMTAHVPIIM QNLLFLANEV DIDALSSCME EFVSSFSHEL TPFASQLAKQ LRNTFVKLMQ 600
  601 ETMDESTTVD DFDSLVDDKS IAAIGILNTL STMILSLENT VDVLREIEAI LLPMINFVLD 660
  661 NNIFDVYAEL FEIIDGCTFA SKEISPIMWG VYEKLQKVLK ESGIEFVEEA TPALSNFITY 720
  721 GGKEFASRPD YIAVMVDIIM QVFNSEHLAV NDRVSACKLT ELLMLNYRGL LDQYVPAFIE 780
  781 VAGNLLLVTE KPTSQTYRVF LLEVIINALY YNPSMSLGVL EMHQWTLPFF ALWFENIPSF 840
  841 TRVHDKKLSL VAILSVISLG AQQVAVAIQD SWGNIMKVMI TLLNTLPEAL AARAELEKEY 900
  901 DGETFNLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2ot8A
Description:	No description for 2ot8A was found.

Predicted Domain #2

Region A:
Residues: [909-1029]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGWNDGIDW EADDDEGVDD FAVEYGGPDL GGEISADVVD DFDEFEHFQG NYLLDEDPLF  60
   61 HTLLDQVDPF SLFQEFMVHL KDNSPVTLQD LVKNLEASEQ QSLQRLVTEK PSTLAVASDK 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits