YRC Public Data Repository - Protein Structure Prediction

Protein:	mrps8
Organism:	Schizosaccharomyces pombe
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps8.

Description	E-value	Query Range	Subject Range
gi\|167740537 - gi\|167740537\|ref\|ZP_02413311.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 14] gi\|167620723 - gi\|167620723\|ref\|ZP_02389354.1\| 30S ribosomal protein S8 [Burkholderia thailandensis Bt4] gi\|167826139 - gi\|167826139\|ref\|ZP_02457610.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 9] gi\|167817742 - gi\|167817742\|ref\|ZP_02449422.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 91] RS8_BURPS - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain K96243) GN=rpsH PE=3 SV=1 gi\|167564403 - gi\|167564403\|ref\|ZP_02357319.1\| 30S ribosomal protein S8 [Burkholderia oklahomensis EO147] RS8_BURMA - 30S ribosomal protein S8 OS=Burkholderia mallei (strain ATCC 23344) GN=rpsH PE=3 SV=1 gi\|243062582, gi... - gi\|243062582\|gb\|EES44768.1\| 30S ribosomal protein S8 [Burkholderia mallei PRL-20], gi\|167001685\|ref\|... gi\|167582609 - gi\|167582609\|ref\|ZP_02375483.1\| 30S ribosomal protein S8 [Burkholderia thailandensis TXDOH] gi\|167571549 - gi\|167571549\|ref\|ZP_02364423.1\| 30S ribosomal protein S8 [Burkholderia oklahomensis C6786] gi\|254261452, gi... - gi\|254261452\|ref\|ZP_04952506.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1710a], gi\|25422... gi\|242316430, gi... - gi\|242316430\|ref\|ZP_04815446.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1106b], gi\|24213... RS8_BURMA - 30S ribosomal protein S8 OS=Burkholderia mallei GN=rpsH PE=3 SV=1 RS8_BURPS - 30S ribosomal protein S8 OS=Burkholderia pseudomallei GN=rpsH PE=3 SV=1 gi\|194514247, gi... - gi\|254198554\|ref\|ZP_04904975.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei S13], gi\|1945142... gi\|254190316, gi... - gi\|254190316\|ref\|ZP_04896824.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei Pasteur 52237], ... gi\|217392191, gi... - gi\|217424735\|ref\|ZP_03456232.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 576], gi\|2173921... gi\|167920830 - gi\|167920830\|ref\|ZP_02507921.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei BCC215] gi\|167912870 - gi\|167912870\|ref\|ZP_02499961.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 112] gi\|184210892, gi... - gi\|254180353\|ref\|ZP_04886951.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1655], gi\|194505... gi\|194316552, gi... - gi\|254174662\|ref\|ZP_04881323.1\| 30S ribosomal protein S8 [Burkholderia mallei ATCC 10399], gi\|194316... gi\|167847651 - gi\|167847651\|ref\|ZP_02473159.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei B7210] gi\|167838198 - gi\|167838198\|ref\|ZP_02465057.1\| 30S ribosomal protein S8 [Burkholderia thailandensis MSMB43] gi\|167904605 - gi\|167904605\|ref\|ZP_02491810.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei NCTC 13177] gi\|167896223 - gi\|167896223\|ref\|ZP_02483625.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 7894] gi\|194528098, gi... - gi\|254206566\|ref\|ZP_04912917.1\| 30S ribosomal protein S8 [Burkholderia mallei JHU], gi\|194528098\|ref... gi\|194523109, gi... - gi\|254201225\|ref\|ZP_04907589.1\| 30S ribosomal protein S8 [Burkholderia mallei FMH], gi\|194523109\|ref... gi\|226198232, gi... - gi\|226198232\|ref\|ZP_03793803.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei Pakistan 9], gi\|... gi\|134245378, gi... - gi\|134283183\|ref\|ZP_01769884.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 305], gi\|1342453... RS8_BURTA - 30S ribosomal protein S8 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP ... RS8_BURP1 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsH PE=3 SV=1 gi\|237814131, gi... - gi\|237814131\|ref\|YP_002898582.1\| ribosomal protein S8 [Burkholderia pseudomallei MSHR346], gi\|237506... gi\|238562968, gi... - gi\|238562968\|ref\|ZP_00439650.2\| 30S ribosomal protein S8 [Burkholderia mallei GB8 horse 4], gi\|23852... gi\|194575847, gi... - gi\|254357104\|ref\|ZP_04973378.1\| 30S ribosomal protein S8 [Burkholderia mallei 2002721280], gi\|194575... RS8_BURM9 - 30S ribosomal protein S8 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsH PE=3 SV=1 RS8_BURMS - 30S ribosomal protein S8 OS=Burkholderia mallei (strain SAVP1) GN=rpsH PE=3 SV=1 RS8_BURM7 - 30S ribosomal protein S8 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsH PE=3 SV=1 RS8_BURP6 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 668) GN=rpsH PE=3 SV=1 RS8_BURP0 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsH PE=3 SV=1	171.0	[0..3]	[151..7]
gi\|67085699, gi\|... - gi\|67157022\|ref\|ZP_00418384.1\| Ribosomal protein S8 [Azotobacter vinelandii AvOP], gi\|67085699\|gb\|EA... gi\|67157022 - gi\|67157022\|ref\|ZP_00418384.1\| Ribosomal protein S8 [Azotobacter vinelandii AvOP]	170.0	[0..3]	[151..7]
gi\|194557572, gi... - gi\|254246587\|ref\|ZP_04939908.1\| Ribosomal protein S8 [Burkholderia cenocepacia PC184], gi\|194557572\|... RS8_BURCC - 30S ribosomal protein S8 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsH PE=3 SV=1 RS8_BURVG - 30S ribosomal protein S8 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsH PE=3 SV=1 RS8_BURCA - 30S ribosomal protein S8 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsH PE=3 SV=1 RS8_BURCH - 30S ribosomal protein S8 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsH PE=3 SV=1 RS8_BURCM - 30S ribosomal protein S8 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsH PE=3 SV=1 gi\|170134378, gi... - gi\|170700708\|ref\|ZP_02891703.1\| ribosomal protein S8 [Burkholderia ambifaria IOP40-10], gi\|170134378... gi\|171318362, gi... - gi\|171318362\|ref\|ZP_02907520.1\| ribosomal protein S8 [Burkholderia ambifaria MEX-5], gi\|171096440\|gb... RS8_BURA4 - 30S ribosomal protein S8 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsH PE=3 SV=1 RS8_BURCJ - 30S ribosomal protein S8 OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / ...	170.0	[0..3]	[151..7]
RS8_SHEDO - 30S ribosomal protein S8 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=r...	169.0	[0..3]	[151..7]
RS8_CUPTR - 30S ribosomal protein S8 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsH PE=3 SV=1 RS8_CUPTR - 30S ribosomal protein S8 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LM... RS8_CUPPJ - 30S ribosomal protein S8 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpsH PE=3 SV=1 RS8_CUPNH - 30S ribosomal protein S8 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN...	169.0	[0..3]	[151..7]
RS8_SHEFN - 30S ribosomal protein S8 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsH PE=3 SV=1	169.0	[0..3]	[151..7]
RS8_THIDA - 30S ribosomal protein S8 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsH PE=3 SV=1	169.0	[0..3]	[151..7]
RS8_BURS3 - 30S ribosomal protein S8 OS=Burkholderia sp. (strain 383) GN=rpsH PE=3 SV=1 RS8_BURL3 - 30S ribosomal protein S8 OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 /...	169.0	[0..3]	[151..7]
RS8_POLSJ - 30S ribosomal protein S8 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsH PE=3 SV=1	168.0	[0..3]	[151..7]
RS8_RALSO - 30S ribosomal protein S8 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsH PE=3 SV=1 RS8_RALSO - 30S ribosomal protein S8 OS=Ralstonia solanacearum GN=rpsH PE=3 SV=1	168.0	[0..3]	[151..7]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLHYVFSHL QNSFRARKSL ASVPNCNSVL ELCAVLYHQG FLSSIQRGDI HGPDALPTIT  60
   61 TRQNVATRRL WLGLKYFEGK PVLHYIRAVS KPSRKVNLTP SELLQFAKGR KVSFVNGLEP 120
  121 AEVGIVETKH GIMSIDDAIK NNLGGNVICR VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1vs5H
Description:	No description for 1vs5H was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.91574154879999	bayes_pls_golite062009
structural molecule activity	9.33953790706737	bayes_pls_golite062009
RNA binding	1.37413951383134	bayes_pls_golite062009
binding	1.233710741259	bayes_pls_golite062009
nucleic acid binding	0.748509060999477	bayes_pls_golite062009
protein binding	0.569993864025864	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: