Protein: | vpr-1 |
Organism: | Caenorhabditis elegans |
Length: | 245 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vpr-1.
Description | E-value | Query Range |
Subject Range |
|
237.0 | [0..1] | [245..1] |
|
236.0 | [0..1] | [243..1] |
|
234.0 | [0..1] | [243..8] |
|
232.0 | [0..1] | [243..1] |
|
229.0 | [0..1] | [243..8] |
Region A: Residues: [1-137] |
1 11 21 31 41 51 | | | | | | 1 MSEKHSLLQV TPNRELVFTG PFSDVVTSHM TLKNTSTNPV CFKVKTTAPK QYCVRPNSGL 60 61 LKSGDSKQIT VMLQPLEGIP SDAGRHKFMV QSCVAPSEDL PDLESVWKII DPAELTYSKL 120 121 MVTFVDKRDP ASGDDTK |
Detection Method: | |
Confidence: | 36.39794 |
Match: | 2criA |
Description: | Solution structure of the MSP domain of mouse VAMP-associated proteinA |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [138-245] |
1 11 21 31 41 51 | | | | | | 1 TFAVRNEDSF ASSGQAQELG SSYSGTPSHD GTVNSLRKSL KSTVDEKEEL QKKVHGLEQE 60 61 IEVMLKKNRK LQQSHSDGAL VDGAYPTLQI FLIAVAALLI GLIVGRLF |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.