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View Structure Prediction Details

Protein: CE15465
Organism: Caenorhabditis elegans
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15465.

Description E-value Query
Range
Subject
Range
gi|40743485, gi|... - gi|67538690|ref|XP_663119.1| hypothetical protein AN5515.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
166.0 [0..8] [390..789]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLTKAETIK YSSLVVLVVQ NCSLVLFMRY AMTKDRPKFL KTITVLFGEI FKCTVSLLLA  60
   61 CIEEKSI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [68-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGLRKIHHE FFVNWRDTLK VLVPSAIYTV QNFLLYVAVD NLPAATYMVT YQLKILTTAA  60
   61 FTVLVLHRRL TIQQWISLFV LFAGVVVVQY DQKMSNEREK AAAAAVLSST LAPTTTVSPF 120
  121 SNLTTTLTT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.23
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [197-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVTTASLASS KTENSVLGFI AVLIACVLSG FAGIYFEKIL KGSNVSIWIR NIQLAFPSIF  60
   61 FAFLFASVKD NSSLYQDGPN PIEIWNNMLQ GFDWAVWVTV AINAFGGLVV AVVIKYADNI 120
  121 LKAFATSLAI VLNCIAAYFL FNFRPSILFL VGASGVIAAV FAYSMYPYKA SHQALPTDAP 180
  181 KEVELQPVVE SSKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle