YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19125
Organism:	Caenorhabditis elegans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19125.

Description	E-value	Query Range	Subject Range
gi\|157775753 - gi\|157775753\|ref\|XP_001665942.1\| hypothetical protein CBG18349 [Caenorhabditis briggsae AF16] gi\|39591860, gi\|... - gi\|39591860\|emb\|CAE71438.1\| Hypothetical protein CBG18349 [Caenorhabditis briggsae], gi\|187025354\|em...	252.0	[0..1]	[260..1]
gi\|110735706, gi... - gi\|21553938\|gb\|AAM63019.1\| unknown [Arabidopsis thaliana], gi\|18417177\|ref\|NP_567805.1\| ribosomal pr...	185.0	[0..33]	[259..30]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	184.0	[0..96]	[246..1]
gi\|94365214, gi\|... - gi\|94365214\|ref\|XP_993414.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	182.0	[0..84]	[254..45]
gi\|114145792, gi... - gi\|32527737\|gb\|AAP86270.1\| Ac2-210 [Rattus norvegicus], gi\|114145792\|ref\|NP_001041363.1\| Ribosomal_L...	182.0	[0..96]	[237..1]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	181.0	[0..96]	[246..1]
gi\|76649602 - gi\|76649602\|ref\|XP_874889.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	179.0	[0..96]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLVRTGS EACRAVSTST AVLSVHPVVK SEDLSAKEIW DRRSKLRVPK LQKDEQLSSK  60
   61 VYFAPEWDLE KKPNLDEGFV NPLKGYGMTP EKWEYYNKVV WPPNYIVPET GL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKPKEVFHCK ESVHFSPKRM WAACQLVWKM NVDEAITQLD MQQLKACNLL MDTIKKAKSR  60
   61 AADEFHIEYP SQMYVADAFP VQSNIVKGAR RHAHDNWNTI RYRYIHIFVR LEEGPAPQQK 120
  121 QRHPQKNGWD HMDEYYNYLR SRTVKYSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits