YRC Public Data Repository - Protein Structure Prediction

Protein:	CE19125
Organism:	Caenorhabditis elegans
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19125.

Description	E-value	Query Range	Subject Range
gi\|157775753 - gi\|157775753\|ref\|XP_001665942.1\| hypothetical protein CBG18349 [Caenorhabditis briggsae AF16] gi\|39591860, gi\|... - gi\|39591860\|emb\|CAE71438.1\| Hypothetical protein CBG18349 [Caenorhabditis briggsae], gi\|187025354\|em...	252.0	[0..1]	[260..1]
gi\|110735706, gi... - gi\|21553938\|gb\|AAM63019.1\| unknown [Arabidopsis thaliana], gi\|18417177\|ref\|NP_567805.1\| ribosomal pr...	185.0	[0..33]	[259..30]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	184.0	[0..96]	[246..1]
gi\|94365214, gi\|... - gi\|94365214\|ref\|XP_993414.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	182.0	[0..84]	[254..45]
gi\|114145792, gi... - gi\|32527737\|gb\|AAP86270.1\| Ac2-210 [Rattus norvegicus], gi\|114145792\|ref\|NP_001041363.1\| Ribosomal_L...	182.0	[0..96]	[237..1]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	181.0	[0..96]	[246..1]
gi\|76649602 - gi\|76649602\|ref\|XP_874889.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	179.0	[0..96]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLVRTGS EACRAVSTST AVLSVHPVVK SEDLSAKEIW DRRSKLRVPK LQKDEQLSSK  60
   61 VYFAPEWDLE KKPNLDEGFV NPLKGYGMTP EKWEYYNKVV WPPNYIVPET GL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.407	a.6.1	Putative DNA-binding domain
View	Download	0.400	a.142.1	PTS-regulatory domain, PRD
View	Download	0.310	a.74.1	Cyclin-like
View	Download	0.307	a.6.1	Putative DNA-binding domain
View	Download	0.277	b.43.4	Riboflavin synthase domain-like

Predicted Domain #2

Region A:
Residues: [113-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKPKEVFHCK ESVHFSPKRM WAACQLVWKM NVDEAITQLD MQQLKACNLL MDTIKKAKSR  60
   61 AADEFHIEYP SQMYVADAFP VQSNIVKGAR RHAHDNWNTI RYRYIHIFVR LEEGPAPQQK 120
  121 QRHPQKNGWD HMDEYYNYLR SRTVKYSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits