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View Structure Prediction Details

Protein: mlt-9
Organism: Caenorhabditis elegans
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mlt-9.

Description E-value Query
Range
Subject
Range
gi|187033272, gi... - gi|39596639|emb|CAE63258.1| Hypothetical protein CBG07630 [Caenorhabditis briggsae], gi|187033272|em...
gi|157771918 - gi|157771918|ref|XP_001677779.1| Hypothetical protein CBG07630 [Caenorhabditis briggsae AF16]
551.0 [0..1] [573..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSATILLLL VHGTLACFPT SQRSYQYGAP TQQFAACTPQ CCGCSQAQPG PQPAAAAAAR  60
   61 VAAAGKTPTE PISVQGSSIE GLLGQKVSLT EFTADGYNAE GGGPVRSGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTCNFDGRP CCWANVPPPD DQLDWQIASG VPVQLQNRGV PQPEGSYLIA YAKSAAPSDE  60
   61 AQFASCSIGC ASSDIVVRAK HWQSESVLLQ VCLRESFPSN AERNPLINCQ EFPYVDGMGT 120
  121 TEVILPKTSL VDIVFVASNF IGDQGDVAIL DDIEVSYDRN GSECQNEFEE GAEEED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2c9aA
Description: Crystal structure of the MAM-Ig module of receptor protein tyrosine phosphatase mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.862864164515796 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [286-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQDNENAIRA EEIEAAAKNK RRELFEKTQP EGKIVSATER FGANGFRGGE KAFRGGAETG  60
   61 AGAGAGSKFG GSFEGAENGN AAVGTSHTEE TVFASVKTAK LPSGH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [391-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVAKGAKTAE FSEVVCNATK CDFENENTCG YKDAHTTQSI RGLTTKFNVV TGQFMNRVTG  60
   61 IKESTEGEYY AATFLFPREM AGLEASVAPF TEQSRIRFHY YEGTHGVQLK GCCTNIENCP 120
  121 FSSDKFVTVA DRAWKTASFK CPKGTDKVIF ICENTRTNQG ACAVDGIGLV ENEGPLKTAK 180
  181 PLC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.88
Match: 2v5yA
Description: No description for 2v5yA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle