| Protein: | hrpf-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 549 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hrpf-1.
| Description | E-value | Query Range |
Subject Range |
|
|
202.0 | [0..6] | [548..8] |
|
Region A: Residues: [1-217] |
1 11 21 31 41 51
| | | | | |
1 MSTAYEVQCR GLPWEATEQE LRDFFGNNGI ESLEIPRRNG RTSGDAKVVF TNEEDYNNAL 60
61 KKDREHLGSR YIEVFPAGGA PTRRGDRGER GDRGDRDHYR SRGAPPRDRY SDRGGPRSSG 120
121 PDSIVRLRGL PFSVTSRDIS DFLAPLPIVR DGILLPDQQR ARPGGEAYVC FETMESVQIA 180
181 KQRHMKNIGH RYIEVFEATH RDLSRFAEEN DLRVPRF
|
| Detection Method: |  |
| Confidence: | 37.69897 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [218-371] |
1 11 21 31 41 51
| | | | | |
1 GPPPFASAPQ TAPRGAYDPY SQPTDPYRNA TDYRRAAEPE DPYARSRAPS VQDYGVRASY 60
61 DPYTQPAAPV SSYPSQQQPS AGYYDNYAPK TAYESYGRER GPDPRDVRDP RDSRMPDPRD 120
121 SRALSDPYAA ESRYSEYGYE SREPYWRGGS GGPP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [372-549] |
1 11 21 31 41 51
| | | | | |
1 SIGGGVGGGG APLAPTGRDP YSVGESWANG AGGPGGPPPV SSDRDRYGSG GYASEPYAQR 60
61 EAGGAMRRSE YGRPDDRYSK PEPYGYSRDR DYGAPQNQHF VLRMRGVPFR ASEADVYDFF 120
121 HPIRPNQVEL LRDHQFQRPS GDARVIFYNR KDYDDALMKD KQYMGERYIE MIPDNGRY
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
