| Protein: | lir-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 309 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lir-1.
| Description | E-value | Query Range |
Subject Range |
|
|
415.0 | [0..19] | [308..57] |
|
Region A: Residues: [1-196] |
1 11 21 31 41 51
| | | | | |
1 MPKFVVIELN DDAATIDLLS YCVKKNFERV SLLTRLEDHP YLRDDQDVVQ DDTQSQGTDG 60
61 MLLQLNDEER QRLMKMISTP GPQTLSMERI QMAPGQGQHI LQQHQIPSTS SYTNNSFIYI 120
121 KSDPQYKDEP QQQSNQFDAT VNSVAHGQAG LSTLEMFACN GSPNGGDVLR RKTPSRKAED 180
181 SIKATCKVCG HDVMYS
|
| Detection Method: |  |
| Confidence: | 53.221849 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [197-309] |
1 11 21 31 41 51
| | | | | |
1 PQRTWNLMRH VWIMHQSSKP NQCSICGYSH IKPYVRKHIE SQHKHDSNAT IIDLKSPELE 60
61 AEWSQLLDQC FGVTYRKWKH HKEDTQHTVF AAGDEDYGHE HHFSPEEDVM TTL
|
| Detection Method: | |
| Confidence: | 8.09691 |
| Match: | 1x6hA |
| Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.5693324142242 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20084827450202 | bayes_pls_golite062009 |
| DNA binding | 1.11228868978256 | bayes_pls_golite062009 |
| nucleic acid binding | 1.10067326005752 | bayes_pls_golite062009 |
| transcription factor activity | 0.33874886911135 | bayes_pls_golite062009 |
| protein binding | 0.186544761618633 | bayes_pls_golite062009 |
