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View Structure Prediction Details

Protein: PLY10_ARATH
Organism: Arabidopsis thaliana
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY10_ARATH.

Description E-value Query
Range
Subject
Range
PLY15_ARATH - Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
487.0 [0..2] [440..24]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIFSRSFLA LSTTLIILAL CINSSTMAQE TEDLNSHSSS NSSTANKLPN DDGAWNEHAV  60
   61 KNPEEVAAMV DMKIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSTERRRLGF FSCATGNPID DCWRCDRNWH LRRKRLANCA IGFGRNAIGG RDGRYYVVTD  60
   61 PSDHDAVNPR PGTLRHAVIQ DRPLWIVFKR DMVITLTQEL IMNSFKTIDG RGVNVAIAGG 120
  121 ACITIQYVTN IIIHGINVHD CRRTGNAMVR SSPSHYGWRT MADGDAISIF GSSHIWIDHN 180
  181 SLSNCADGLI DAIMGSTAIT ISNNYMTHHN EVMLMGHSDS YTRDKLMQVT IAYNHFGEGL 240
  241 IQRMPRCRHG YFHVVNNDYT HWVMYAIGGS ANPTINSQGN RFLAPGNPFA KEVTKRVGSW 300
  301 QGEWKQWNWR SQGDLMLNGA YFTKSGAAAP ASYARASSLG AKPASVVSML TYSSGALKCR 360
  361 IGMRC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.30103
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle