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View Structure Prediction Details

Protein: ATL23_ARATH
Organism: Arabidopsis thaliana
Length: 163 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATL23_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593762 - gi|21593762|gb|AAM65729.1| unknown [Arabidopsis thaliana]
139.0 [0..1] [163..1]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYTRISPAL VPSLSPTAAA ESSGGGTMIA TVFMALLLPC VGMCIVFLIY LFLLWCSTRR  60
   61 RIERLRFAEP VKPVTG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGLSVLELEK IPKLTGRELA VIARSTECAV CLEDIESGQS TRLVPGCNHG FHQLCADTWL  60
   61 SNHTVCPVCR AELAPNLPQC NENQSPC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1iymA
Description: EL5 RING-H2 domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle