YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15237955, gi\|...
Organism:	Arabidopsis thaliana
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237955, gi|....

Description	E-value	Query Range	Subject Range
gi\|6714411, gi\|6... - gi\|67633618\|gb\|AAY78733.1\| universal stress protein family protein [Arabidopsis thaliana], gi\|671441...	179.0	[0..1]	[285..1]
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	166.0	[0..7]	[263..37]
gi\|55229429, gi\|... - gi\|55376704\|ref\|YP_134555.1\| universal stress protein [Haloarcula marismortui ATCC 43049], gi\|552294...	144.0	[0..2]	[270..24]
gi\|33866511, gi\|... - gi\|33866511\|ref\|NP_898070.1\| hypothetical protein SYNW1979 [Synechococcus sp. WH 8102], gi\|33633289\|...	138.0	[0..7]	[266..29]
gi\|83756959, gi\|... - gi\|83815565\|ref\|YP_446095.1\| universal stress protein [Salinibacter ruber DSM 13855], gi\|83756959\|gb...	137.0	[0..46]	[265..112]
gi\|7483166 - pir\|\|G69469 conserved hypothetical protein AF1760 - Archaeoglobus fulgidus gi\|11499349, gi\|... - gi\|2648791\|gb\|AAB89491.1\| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304], gi\|11499...	136.0	[0..11]	[267..37]
gi\|75910683, gi\|... - gi\|75910683\|ref\|YP_324979.1\| hypothetical protein Ava_4486 [Anabaena variabilis ATCC 29413], gi\|7570...	135.0	[0..7]	[265..52]
gi\|81168392, gi\|... - gi\|81299511\|ref\|YP_399719.1\| hypothetical protein Synpcc7942_0700 [Synechococcus elongatus PCC 7942]...	134.0	[0..7]	[262..58]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLKKSAK LSLRRVRINS PSIRFKPDSS SIERDQRIEF LGENGDDAGS GEEDTKEANN  60
   61 ESEEVEDKEE ERVKVIVEEE EEKEQDDAKS FNIGGGEGKK EAVAAVEAVE EEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGNRVMVVVD KALASTGALE WAITHTLQPQ DTLFLLYFAK PFRKSKRKNR KREVKTDELV  60
   61 HTLKKLCQTK RPGIEVEIRR LEGKDKDKGQ KIVEESKKQQ VSLLVVGQEK KPPVWRLLKR 120
  121 WAWKRRRGHE GVLKYCLENA SCMTIAVKPK NRKLGGYLIT TKRHKNFWLL A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2pfsA
Description:	No description for 2pfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits