YRC Public Data Repository - Protein Structure Prediction

Protein:	LEA5_CITSI
Organism:	Citrus sinensis
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEA5_CITSI.

Description	E-value	Query Range	Subject Range
gi\|90404835, gi\|... - gi\|90404835\|gb\|ABD93883.1\| group 5 late embryogenesis abundant protein [Citrus unshiu], gi\|90404816\|...	135.0	[0..1]	[97..1]
gi\|7489163, gi\|2... - pir\|\|T01984 late-embryogenesis protein lea5 - common tobacco, gi\|2981167\|gb\|AAC06242.1\| late embryog...	134.0	[0..1]	[97..1]
gi\|3193289, gi\|7... - pir\|\|T01312 hypothetical protein T14P8.2 - Arabidopsis thaliana, gi\|7268998\|emb\|CAB80731.1\| AT4g023...	120.0	[0..1]	[94..110]
gi\|52788395 - gi\|52788395\|gb\|AAU87300.1\| LEA [Pinus halepensis]	110.0	[0..1]	[94..1]
gi\|76782046, gi\|... - gi\|76782046\|gb\|ABA54795.1\| late embryogenesis abundant protein [Picea glauca], pir\|\|T09146 late-embr... gi\|76782082 - gi\|76782082\|gb\|ABA54813.1\| late embryogenesis abundant protein [Picea mariana]	110.0	[0..1]	[93..1]
gi\|255627541, gi... - pir\|\|T08871 desiccation protective protein LEA5 - soybean, gi\|255627541\|gb\|ACU14115.1\| unknown [Gly...	109.0	[0..1]	[92..1]
gi\|76573297, gi\|... - gi\|77999305\|gb\|ABB16999.1\| unknown [Solanum tuberosum], gi\|76573297\|gb\|ABA46753.1\| unknown [Solanum ...	109.0	[0..1]	[93..1]
LEA5D_GOSHI - Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1	109.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLFKAKL LLAPVADGIS LSISRRGYAA AAPLGTISRT GIMEKNDLRP AVREDSGASS  60
   61 AWAPDPITGY YRPENRAVEI DPAELREMLL NHKVRAH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.853872
Match:	PF03242.4
Description:	No description for PF03242.4 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits