YRC Public Data Repository - Protein Structure Prediction

Protein:	MS2B_DROMA
Organism:	Drosophila mauritiana
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MS2B_DROMA.

Description	E-value	Query Range	Subject Range
MS2B_DROSI - Accessory gland-specific peptide 26Ab OS=Drosophila simulans GN=Acp26Ab PE=2 SV=1	167.0	[0..1]	[90..1]
gi\|46488074 - gi\|46488074\|gb\|AAS99379.1\| accessory gland protein 26Ab [Drosophila sechellia]	157.0	[0..1]	[90..1]
gi\|46488190 - gi\|46488190\|gb\|AAS99437.1\| accessory gland protein 26Ab [Drosophila mauritiana]	154.0	[0..1]	[90..1]
gi\|4456064, gi\|4... - gi\|8258\|emb\|CAA50249.1\| Mst26Ab [Drosophila melanogaster], gi\|4467390\|emb\|CAB37624.1\| Acp26Ab [Droso...	152.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYFAVLCIF SCICLWQFSD AAPFISVQSS SQSRSQKVMN GMLRTLYDYS VQDSVNDATG  60
   61 HLIHTHKADF NSDVMSPEEI ERVRQQLNMA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.21467
Match:	PF05777.3
Description:	No description for PF05777.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits