YRC Public Data Repository - Protein Structure Prediction

Protein:	PYYA_DANRE
Organism:	Danio rerio
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYYA_DANRE.

Description	E-value	Query Range	Subject Range
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	153.0	[0..1]	[97..1]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	153.0	[0..1]	[97..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	153.0	[0..1]	[97..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	153.0	[0..1]	[97..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	151.0	[0..1]	[97..1]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	150.0	[0..1]	[97..2]
gi\|73976504 - gi\|73976504\|ref\|XP_532492.2\| PREDICTED: similar to Neuropeptide Y precursor [Canis familiaris]	149.0	[0..1]	[97..1]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	148.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMLKPWTV VATVLICVLL CLGTFVDAYP PKPENPGDDA APEELAKYYT ALRHYINLIT  60
   61 RQRYGKRSTS EDVMAELLFG DDTEHKQRSR YDDSFMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.33626508331649	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: